Variant report

Variant	rs4776620
Chromosome Location	chr15:73231722-73231723
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11072397	0.81[ASN][1000 genomes]
rs11854504	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11858307	0.81[ASN][1000 genomes]
rs1900899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28451375	0.81[ASN][1000 genomes]
rs35755007	0.81[ASN][1000 genomes]
rs35973515	0.81[ASN][1000 genomes]
rs4632105	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4777568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416498	1.00[YRI][hapmap]
rs6495030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495032	0.81[ASN][1000 genomes]
rs71397271	0.81[ASN][1000 genomes]
rs72739407	0.81[ASN][1000 genomes]
rs8033874	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034178	0.93[EUR][1000 genomes]
rs8034355	0.93[EUR][1000 genomes]
rs8035197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73229400-73238200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73231000-73233000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:73231200-73232800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:73231200-73233600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73231400-73232400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:73231400-73232800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr15:73231400-73232800	Enhancers	Fetal Brain Male	brain
8	chr15:73231600-73236600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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