Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73253962..73256097-chr15:73259190..73261337,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11072397	0.86[AMR][1000 genomes]
rs11632079	0.87[CEU][hapmap]
rs12902056	0.87[CEU][hapmap]
rs12908090	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12908199	0.87[CEU][hapmap]
rs12909626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12913589	0.85[EUR][1000 genomes]
rs12914663	0.87[CEU][hapmap]
rs12917161	0.84[AMR][1000 genomes]
rs2415214	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28451375	0.86[AMR][1000 genomes]
rs34691393	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34770199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34846029	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35206920	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35686353	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35988290	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36019616	0.89[AMR][1000 genomes]
rs4636887	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6495032	0.84[AMR][1000 genomes]
rs71397271	0.86[AMR][1000 genomes]
rs7179577	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72739406	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72739407	0.86[AMR][1000 genomes]
rs8037213	0.87[CEU][hapmap]
rs8039439	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs8039533	0.87[CEU][hapmap]
rs8039640	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521475	chr15:73250485-73263405	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16957509	LRRC49	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73253400-73254600	Enhancers	Duodenum Mucosa	Duodenum
2	chr15:73253400-73255000	Enhancers	Colonic Mucosa	Colon
3	chr15:73253400-73258200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:73253400-73261400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:73253600-73254400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr15:73253600-73254800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:73253600-73255000	Enhancers	Fetal Muscle Leg	muscle
8	chr15:73253600-73255200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr15:73253800-73254400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:73253800-73254800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:73253800-73255200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr15:73253800-73255200	Enhancers	Fetal Intestine Small	intestine
13	chr15:73254000-73254600	Enhancers	Fetal Brain Male	brain
14	chr15:73254200-73255200	Enhancers	Fetal Intestine Large	intestine

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