Variant report

Variant	rs72739406
Chromosome Location	chr15:73247299-73247300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12903656	1.00[ASN][1000 genomes]
rs12908090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12909626	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913381	1.00[ASN][1000 genomes]
rs12913589	0.83[EUR][1000 genomes]
rs12917161	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16957509	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2415214	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34691393	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770199	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846029	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35206920	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35686353	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988290	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36019616	1.00[ASN][1000 genomes]
rs36048782	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4636887	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176144	1.00[ASN][1000 genomes]
rs7179577	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73238400-73253800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73246400-73247600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr15:73246400-73247800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:73246600-73247600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73246600-73247800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:73246800-73247600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr15:73246800-73247600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:73247000-73247600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:73247000-73247800	Enhancers	Fetal Kidney	kidney
10	chr15:73247000-73248000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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