Variant report

Variant	rs12917161
Chromosome Location	chr15:73317111-73317112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12903656	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12908090	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12909626	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12913381	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16957509	0.84[AMR][1000 genomes]
rs2415214	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34691393	1.00[ASN][1000 genomes]
rs34770199	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34846029	1.00[ASN][1000 genomes]
rs35206920	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35686353	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35988290	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36019616	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36048782	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4636887	1.00[ASN][1000 genomes]
rs7176144	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7179577	1.00[ASN][1000 genomes]
rs72739406	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73314600-73318800	Weak transcription	Fetal Intestine Large	intestine
2	chr15:73315000-73321200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:73315200-73319000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr15:73315400-73320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73315800-73319200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:73316400-73318800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:73316400-73321800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:73316600-73318600	Weak transcription	Fetal Brain Female	brain
9	chr15:73316800-73318800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:73316800-73319000	Weak transcription	Fetal Brain Male	brain
11	chr15:73317000-73320400	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links