Variant report

Variant	rs12908090
Chromosome Location	chr15:73275646-73275647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73274512..73277456-chr15:73278533..73282475,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11632079	1.00[CEU][hapmap]
rs11632433	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12902056	1.00[CEU][hapmap]
rs12903656	1.00[ASN][1000 genomes]
rs12908199	1.00[CEU][hapmap]
rs12909626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913381	1.00[ASN][1000 genomes]
rs12913589	0.87[EUR][1000 genomes]
rs12914663	1.00[CEU][hapmap]
rs12917161	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16957509	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2415214	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34691393	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770199	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846029	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35206920	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35686353	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988290	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36019616	1.00[ASN][1000 genomes]
rs36048782	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4636887	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176144	1.00[ASN][1000 genomes]
rs7179577	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037213	1.00[CEU][hapmap]
rs8039439	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs8039533	1.00[CEU][hapmap]
rs8039640	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73274200-73276000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:73274200-73278000	Enhancers	Fetal Brain Male	brain
3	chr15:73274600-73276200	Enhancers	Rectal Smooth Muscle	rectum
4	chr15:73275000-73276200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:73275000-73276600	Enhancers	Colon Smooth Muscle	Colon
6	chr15:73275400-73276000	Weak transcription	Fetal Brain Female	brain

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