Variant report

Variant	rs12913381
Chromosome Location	chr15:73334035-73334036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11630441	0.86[AMR][1000 genomes]
rs11630460	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11630572	0.90[AMR][1000 genomes]
rs11632079	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11632354	0.90[AMR][1000 genomes]
rs11632433	0.90[AMR][1000 genomes]
rs11637722	0.90[AMR][1000 genomes]
rs11856233	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11857768	0.83[AMR][1000 genomes]
rs12902056	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12903656	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908090	1.00[ASN][1000 genomes]
rs12908199	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12909626	1.00[ASN][1000 genomes]
rs12912599	0.93[EUR][1000 genomes]
rs12914663	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12917161	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2415214	1.00[ASN][1000 genomes]
rs34160980	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34182754	0.90[AMR][1000 genomes]
rs34291790	0.90[AMR][1000 genomes]
rs34326722	0.90[AMR][1000 genomes]
rs34355572	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34427117	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34431223	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34649871	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34691393	1.00[ASN][1000 genomes]
rs34770199	1.00[ASN][1000 genomes]
rs34846029	1.00[ASN][1000 genomes]
rs35082203	0.90[AMR][1000 genomes]
rs35133756	0.90[AMR][1000 genomes]
rs35206920	1.00[ASN][1000 genomes]
rs35660974	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35686353	1.00[ASN][1000 genomes]
rs35767004	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35768298	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35988290	1.00[ASN][1000 genomes]
rs36019616	1.00[ASN][1000 genomes]
rs36045491	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36048782	1.00[ASN][1000 genomes]
rs4636887	1.00[ASN][1000 genomes]
rs66473967	0.90[AMR][1000 genomes]
rs68000913	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68139669	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71397276	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71397277	0.90[AMR][1000 genomes]
rs7176144	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179577	1.00[ASN][1000 genomes]
rs72739406	1.00[ASN][1000 genomes]
rs72741411	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72741417	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72741432	0.90[AMR][1000 genomes]
rs7495433	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8037213	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8039439	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8039533	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8039640	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73331000-73339200	Weak transcription	Pancreas	Pancrea
2	chr15:73331400-73334400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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