Variant report

Variant	rs35767004
Chromosome Location	chr15:73393966-73393967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73392625..73394510-chr15:73395683..73398549,2	K562	blood:
2	chr15:73075569..73078219-chr15:73393026..73394762,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11629919	0.86[AMR][1000 genomes]
rs11630441	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11630460	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11630572	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11630633	0.86[AMR][1000 genomes]
rs11632079	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11632354	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11632433	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11634898	0.86[AMR][1000 genomes]
rs11637722	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11856233	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11857768	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12902056	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12908199	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12913381	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12914663	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34160980	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34182754	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34291790	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34326722	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34355572	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34427117	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34431223	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34649871	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35082203	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35133756	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35660974	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35768298	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36045491	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4625692	0.93[ASN][1000 genomes]
rs66473967	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs68000913	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68139669	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71397276	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71397277	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72741411	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72741417	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72741432	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7495433	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8029474	0.86[AMR][1000 genomes]
rs8037213	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8039439	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8039533	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8039640	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904339	chr15:73375847-73483718	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904341	chr15:73390790-73483718	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73371200-73397000	Weak transcription	Pancreas	Pancrea
2	chr15:73384600-73409200	Weak transcription	Fetal Lung	lung
3	chr15:73388800-73431200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:73389000-73401000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73389000-73404000	Weak transcription	Ovary	ovary
6	chr15:73390000-73400800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:73392000-73400800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:73392400-73397600	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:73392400-73397600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:73392400-73400800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:73392600-73398000	Weak transcription	Brain Substantia Nigra	brain
12	chr15:73393000-73395200	Weak transcription	Psoas Muscle	Psoas
13	chr15:73393200-73422400	Weak transcription	Aorta	Aorta
14	chr15:73393600-73394000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:73393600-73394000	Enhancers	Fetal Brain Male	brain
16	chr15:73393600-73394000	Enhancers	Fetal Intestine Large	intestine
17	chr15:73393600-73394000	Genic enhancers	Fetal Intestine Small	intestine
18	chr15:73393600-73394200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr15:73393600-73394200	Enhancers	HepG2	liver
20	chr15:73393800-73394000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:73393800-73394000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr15:73393800-73394000	Enhancers	Sigmoid Colon	Sigmoid Colon

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