Variant report

Variant	rs66473967
Chromosome Location	chr15:73505609-73505610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11629605	1.00[ASN][1000 genomes]
rs11629919	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630240	1.00[ASN][1000 genomes]
rs11630441	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11630460	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11630572	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630633	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631651	1.00[ASN][1000 genomes]
rs11632079	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11632354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634550	1.00[ASN][1000 genomes]
rs11634898	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635682	1.00[ASN][1000 genomes]
rs11635686	1.00[ASN][1000 genomes]
rs11635910	1.00[ASN][1000 genomes]
rs11636411	1.00[ASN][1000 genomes]
rs11636462	1.00[ASN][1000 genomes]
rs11637722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639277	1.00[ASN][1000 genomes]
rs11856233	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11857768	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902056	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12908199	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12909882	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910852	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913381	0.90[AMR][1000 genomes]
rs12914663	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34160980	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34182754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34291790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34326722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34355572	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34427117	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34431223	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34649871	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35031381	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35082203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35133756	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35660974	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767004	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35768298	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36045491	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68000913	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68139669	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71397276	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71397277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741411	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72741417	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72741432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495433	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8024434	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027745	1.00[ASN][1000 genomes]
rs8029474	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032565	1.00[ASN][1000 genomes]
rs8035424	1.00[ASN][1000 genomes]
rs8037213	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8039439	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039533	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8039640	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73474200-73523800	Weak transcription	Esophagus	oesophagus
2	chr15:73475200-73517600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:73476200-73506200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:73483600-73505800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:73487200-73519800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:73492200-73518000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:73492400-73516200	Weak transcription	Fetal Brain Male	brain
8	chr15:73493400-73528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:73495800-73507400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:73496200-73506200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:73496800-73507400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:73497000-73517600	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:73497400-73505800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
15	chr15:73498000-73515200	Weak transcription	Fetal Lung	lung
16	chr15:73502400-73508000	Weak transcription	Fetal Intestine Large	intestine
17	chr15:73502800-73506800	Weak transcription	Small Intestine	intestine
18	chr15:73502800-73517200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:73505600-73505800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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