Variant report

Variant	rs35031381
Chromosome Location	chr15:73582675-73582676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11629919	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11630460	0.82[AMR][1000 genomes]
rs11630572	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11630633	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11632354	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11632433	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11634898	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11637722	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11857768	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12902056	0.82[AMR][1000 genomes]
rs12909882	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12910852	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12914663	0.82[AMR][1000 genomes]
rs34160980	0.82[AMR][1000 genomes]
rs34182754	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34291790	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34326722	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35082203	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35133756	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35660974	0.82[AMR][1000 genomes]
rs35768298	0.82[AMR][1000 genomes]
rs36045491	0.82[AMR][1000 genomes]
rs66473967	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68139669	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs71397276	0.82[AMR][1000 genomes]
rs71397277	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72741411	0.82[AMR][1000 genomes]
rs72741417	0.82[AMR][1000 genomes]
rs72741432	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8024434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8029474	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8039533	0.82[AMR][1000 genomes]
rs8039640	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:73546800-73583000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
8	chr15:73547800-73584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:73552400-73588200	Weak transcription	Hela-S3	cervix
10	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
11	chr15:73560800-73597200	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr15:73562800-73583000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:73563200-73598600	Weak transcription	Stomach Mucosa	stomach
14	chr15:73563400-73585600	Strong transcription	Fetal Intestine Large	intestine
15	chr15:73563600-73593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:73566400-73597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:73568600-73600800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:73570200-73597000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:73570400-73597000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:73571200-73601400	Strong transcription	Fetal Stomach	stomach
21	chr15:73572400-73587600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:73574000-73583600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:73574000-73596800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:73574800-73588000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:73575000-73583600	Strong transcription	Brain Inferior Temporal Lobe	brain
26	chr15:73575000-73584200	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr15:73575200-73583600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:73575200-73583800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:73575600-73585600	Weak transcription	HepG2	liver
30	chr15:73576000-73586400	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:73576200-73583000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:73576200-73585600	Weak transcription	Esophagus	oesophagus
33	chr15:73576200-73587600	Weak transcription	Right Ventricle	heart
34	chr15:73576400-73594600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:73576600-73585000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:73577600-73583600	Strong transcription	Liver	Liver
37	chr15:73577600-73585200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr15:73577800-73584000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:73577800-73584400	Strong transcription	Fetal Brain Female	brain
40	chr15:73577800-73586600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr15:73577800-73598200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr15:73578000-73583400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:73578000-73583400	Strong transcription	Aorta	Aorta
44	chr15:73578000-73583400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:73578000-73583600	Strong transcription	Brain Cingulate Gyrus	brain
46	chr15:73578000-73584400	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:73578000-73584400	Strong transcription	Ovary	ovary
48	chr15:73578000-73586400	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:73578200-73590600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:73578400-73584000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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