Variant report

Variant	rs12910852
Chromosome Location	chr15:73573376-73573377
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11629605	1.00[ASN][1000 genomes]
rs11629919	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630240	1.00[ASN][1000 genomes]
rs11630572	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630633	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631651	1.00[ASN][1000 genomes]
rs11632354	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632433	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634550	1.00[ASN][1000 genomes]
rs11634898	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635682	1.00[ASN][1000 genomes]
rs11635686	1.00[ASN][1000 genomes]
rs11635910	1.00[ASN][1000 genomes]
rs11636411	1.00[ASN][1000 genomes]
rs11636462	1.00[ASN][1000 genomes]
rs11637722	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639277	1.00[ASN][1000 genomes]
rs11857768	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12909882	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34182754	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34291790	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34326722	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35031381	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35082203	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35133756	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35660974	1.00[ASN][1000 genomes]
rs35768298	1.00[ASN][1000 genomes]
rs66473967	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68139669	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71397276	1.00[ASN][1000 genomes]
rs71397277	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741432	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024434	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027745	1.00[ASN][1000 genomes]
rs8029474	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032565	1.00[ASN][1000 genomes]
rs8035424	1.00[ASN][1000 genomes]
rs8039439	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:73535200-73588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:73540000-73584800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:73544400-73583000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:73546800-73583000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:73546800-73588600	Weak transcription	Spleen	Spleen
10	chr15:73547600-73576600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:73547800-73584600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:73548200-73575000	Weak transcription	Gastric	stomach
13	chr15:73548200-73575200	Weak transcription	Pancreas	Pancrea
14	chr15:73548200-73575600	Weak transcription	Esophagus	oesophagus
15	chr15:73549200-73575200	Weak transcription	Brain Germinal Matrix	brain
16	chr15:73549200-73575200	Weak transcription	Lung	lung
17	chr15:73550800-73581400	Weak transcription	HMEC	breast
18	chr15:73552000-73577800	Weak transcription	Psoas Muscle	Psoas
19	chr15:73552400-73588200	Weak transcription	Hela-S3	cervix
20	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
21	chr15:73553800-73581200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:73555200-73575600	Weak transcription	Colonic Mucosa	Colon
23	chr15:73560800-73597200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr15:73562800-73583000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:73563000-73574600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:73563200-73578000	Weak transcription	Aorta	Aorta
27	chr15:73563200-73578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:73563200-73598600	Weak transcription	Stomach Mucosa	stomach
29	chr15:73563400-73574200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:73563400-73575000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:73563400-73575000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr15:73563400-73575200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:73563400-73575400	Weak transcription	Adipose Nuclei	Adipose
34	chr15:73563400-73575600	Weak transcription	Right Ventricle	heart
35	chr15:73563400-73581000	Weak transcription	Fetal Brain Male	brain
36	chr15:73563400-73581200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:73563400-73585600	Strong transcription	Fetal Intestine Large	intestine
38	chr15:73563600-73574800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:73563600-73578800	Weak transcription	A549	lung
40	chr15:73563600-73593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:73563800-73575000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:73563800-73575600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:73565200-73574000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:73565800-73575200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:73565800-73575200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:73565800-73575200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr15:73565800-73575400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:73565800-73575600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:73565800-73575600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:73565800-73575800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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