Variant report

Variant	rs8035424
Chromosome Location	chr15:73650406-73650407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11629605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629919	1.00[ASN][1000 genomes]
rs11630240	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630572	1.00[ASN][1000 genomes]
rs11630633	1.00[ASN][1000 genomes]
rs11631651	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632354	1.00[ASN][1000 genomes]
rs11632433	1.00[ASN][1000 genomes]
rs11634550	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634898	1.00[ASN][1000 genomes]
rs11634918	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11635682	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635686	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635910	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636411	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636462	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637722	1.00[ASN][1000 genomes]
rs11639277	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857768	1.00[ASN][1000 genomes]
rs12909882	1.00[ASN][1000 genomes]
rs12910852	1.00[ASN][1000 genomes]
rs2013657	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34291790	1.00[ASN][1000 genomes]
rs34326722	1.00[ASN][1000 genomes]
rs35082203	1.00[ASN][1000 genomes]
rs35133756	1.00[ASN][1000 genomes]
rs3940418	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4575492	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59322618	0.92[EUR][1000 genomes]
rs66473967	1.00[ASN][1000 genomes]
rs68139669	1.00[ASN][1000 genomes]
rs71397277	1.00[ASN][1000 genomes]
rs72741432	1.00[ASN][1000 genomes]
rs74022954	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8024056	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8024434	1.00[ASN][1000 genomes]
rs8027745	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029474	1.00[ASN][1000 genomes]
rs8032565	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73644800-73655800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:73645000-73655400	Weak transcription	Fetal Brain Female	brain
3	chr15:73645400-73654800	Enhancers	Fetal Heart	heart
4	chr15:73646600-73653800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:73646800-73653600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:73646800-73653800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:73646800-73654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:73647000-73654000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:73647000-73654400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:73648400-73653200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:73648400-73653600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:73648600-73651200	Weak transcription	Left Ventricle	heart
13	chr15:73649400-73651600	Weak transcription	Right Ventricle	heart
14	chr15:73649600-73650600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:73649800-73651000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:73650000-73652000	Enhancers	Fetal Intestine Small	intestine
17	chr15:73650200-73652400	Enhancers	Duodenum Mucosa	Duodenum
18	chr15:73650200-73652800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:73650400-73651000	Enhancers	Gastric	stomach
20	chr15:73650400-73651200	Enhancers	Pancreas	Pancrea
21	chr15:73650400-73652000	Enhancers	Fetal Intestine Large	intestine
22	chr15:73650400-73652000	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr15:73650400-73652400	Enhancers	Right Atrium	heart

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