Variant report

Variant	rs8024056
Chromosome Location	chr15:73656768-73656769
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73655148..73657136-chr15:73673095..73675743,2	MCF-7	breast:
2	chr15:73653780..73658080-chr15:73658214..73662015,4	MCF-7	breast:
3	chr15:73644236..73646707-chr15:73654273..73657085,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138622	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11629605	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11630240	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11631651	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11634550	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11634918	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635682	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11635686	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11635910	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11636411	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11636462	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11639277	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2013657	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3940418	0.84[EUR][1000 genomes]
rs4575492	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59322618	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74022954	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8027745	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8032565	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8035424	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8024056	SDSL	trans	brain	seeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73651200-73659000	Weak transcription	Pancreas	Pancrea
2	chr15:73651600-73658600	Enhancers	Right Ventricle	heart
3	chr15:73653200-73657200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:73654600-73657800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:73655400-73657000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:73655400-73657200	Enhancers	Fetal Heart	heart
7	chr15:73655600-73657800	Weak transcription	Left Ventricle	heart
8	chr15:73655800-73658200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:73655800-73658200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:73656000-73657200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:73656000-73657600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:73656000-73657800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:73656200-73657000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:73656200-73657600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:73656200-73658200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:73656200-73658200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:73656400-73658200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:73656400-73658600	Enhancers	Fetal Brain Male	brain
19	chr15:73656400-73658600	Weak transcription	Right Atrium	heart
20	chr15:73656600-73656800	Bivalent Enhancer	Placenta	Placenta
21	chr15:73656600-73657000	Weak transcription	H1 Cell Line	embryonic stem cell

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