Variant report

Variant	rs11630240
Chromosome Location	chr15:73645403-73645404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73644236..73646707-chr15:73654273..73657085,2	MCF-7	breast:
2	chr15:73625970..73628583-chr15:73644302..73646337,2	MCF-7	breast:
3	chr15:73644157..73645827-chr15:73659799..73662311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138622	Chromatin interaction
ENSG00000259650	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11629605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629919	1.00[ASN][1000 genomes]
rs11630572	1.00[ASN][1000 genomes]
rs11630633	1.00[ASN][1000 genomes]
rs11631651	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632354	1.00[ASN][1000 genomes]
rs11632433	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11634550	1.00[ASN][1000 genomes]
rs11634898	1.00[ASN][1000 genomes]
rs11634918	0.92[EUR][1000 genomes]
rs11635682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635686	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637722	1.00[ASN][1000 genomes]
rs11639277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857768	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12909882	1.00[ASN][1000 genomes]
rs12910852	1.00[ASN][1000 genomes]
rs34291790	1.00[ASN][1000 genomes]
rs34326722	1.00[ASN][1000 genomes]
rs35082203	1.00[ASN][1000 genomes]
rs35133756	1.00[ASN][1000 genomes]
rs512943	0.82[EUR][1000 genomes]
rs59322618	0.82[EUR][1000 genomes]
rs66473967	1.00[ASN][1000 genomes]
rs68139669	1.00[ASN][1000 genomes]
rs71397277	1.00[ASN][1000 genomes]
rs72741432	1.00[ASN][1000 genomes]
rs74022954	0.88[EUR][1000 genomes]
rs8024056	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8024434	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8027745	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029474	1.00[ASN][1000 genomes]
rs8032565	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035424	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73635200-73646600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73636000-73645800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:73636000-73646400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:73636200-73646000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:73637200-73645800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:73641400-73646000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:73641600-73645800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:73642400-73645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:73642400-73646400	Enhancers	Right Ventricle	heart
10	chr15:73643400-73648400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:73644000-73647000	Enhancers	Left Ventricle	heart
12	chr15:73644400-73646000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:73644800-73646000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:73644800-73655800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:73645000-73646000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:73645000-73646200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:73645000-73650400	Weak transcription	Right Atrium	heart
18	chr15:73645000-73655400	Weak transcription	Fetal Brain Female	brain
19	chr15:73645400-73647000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:73645400-73654800	Enhancers	Fetal Heart	heart

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