Variant report

Variant	rs8029474
Chromosome Location	chr15:73591553-73591554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11629605	1.00[ASN][1000 genomes]
rs11629919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630240	1.00[ASN][1000 genomes]
rs11630441	0.82[AMR][1000 genomes]
rs11630460	0.89[AMR][1000 genomes]
rs11630572	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631651	1.00[ASN][1000 genomes]
rs11632354	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632433	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634550	1.00[ASN][1000 genomes]
rs11634898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635682	1.00[ASN][1000 genomes]
rs11635686	1.00[ASN][1000 genomes]
rs11635910	1.00[ASN][1000 genomes]
rs11636411	1.00[ASN][1000 genomes]
rs11636462	1.00[ASN][1000 genomes]
rs11637722	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639277	1.00[ASN][1000 genomes]
rs11857768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12902056	0.89[AMR][1000 genomes]
rs12908199	0.83[AMR][1000 genomes]
rs12909882	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910852	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12914663	0.89[AMR][1000 genomes]
rs34160980	0.89[AMR][1000 genomes]
rs34182754	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34291790	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34326722	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34355572	0.86[AMR][1000 genomes]
rs34431223	0.86[AMR][1000 genomes]
rs35031381	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35082203	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35133756	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35660974	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35767004	0.86[AMR][1000 genomes]
rs35768298	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36045491	0.89[AMR][1000 genomes]
rs66473967	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68000913	0.86[AMR][1000 genomes]
rs68139669	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71397276	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71397277	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741411	0.89[AMR][1000 genomes]
rs72741417	0.89[AMR][1000 genomes]
rs72741432	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024434	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027745	1.00[ASN][1000 genomes]
rs8032565	1.00[ASN][1000 genomes]
rs8035424	1.00[ASN][1000 genomes]
rs8037213	0.86[AMR][1000 genomes]
rs8039439	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8039533	0.89[AMR][1000 genomes]
rs8039640	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73536200-73602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:73538000-73593400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:73552800-73598400	Weak transcription	Small Intestine	intestine
4	chr15:73560800-73597200	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr15:73563200-73598600	Weak transcription	Stomach Mucosa	stomach
6	chr15:73563600-73593600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:73566400-73597800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:73568600-73600800	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr15:73570200-73597000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:73570400-73597000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:73571200-73601400	Strong transcription	Fetal Stomach	stomach
12	chr15:73574000-73596800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:73576400-73594600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:73577800-73598200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr15:73579200-73598200	Weak transcription	Psoas Muscle	Psoas
16	chr15:73580400-73594400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:73581600-73598000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:73582000-73595200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr15:73582000-73598000	Weak transcription	Fetal Heart	heart
20	chr15:73582800-73596800	Strong transcription	Fetal Lung	lung
21	chr15:73583400-73597000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:73583400-73598400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:73584600-73598000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:73584800-73597000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:73585000-73599400	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr15:73585400-73597200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr15:73585400-73599600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:73585600-73591600	Strong transcription	Aorta	Aorta
29	chr15:73585600-73591600	Strong transcription	Pancreas	Pancrea
30	chr15:73585600-73592000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr15:73585600-73597000	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr15:73586400-73593600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:73586800-73601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:73587200-73592000	Strong transcription	Colonic Mucosa	Colon
35	chr15:73587200-73597000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:73587200-73597000	Strong transcription	Brain Angular Gyrus	brain
37	chr15:73587400-73591600	Strong transcription	Brain Hippocampus Middle	brain
38	chr15:73587400-73591600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:73587400-73592000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:73587400-73596600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:73587600-73591600	Strong transcription	Brain Substantia Nigra	brain
42	chr15:73587600-73591600	Strong transcription	Fetal Brain Female	brain
43	chr15:73587600-73592600	Strong transcription	Brain Germinal Matrix	brain
44	chr15:73587600-73597400	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr15:73588000-73591600	Strong transcription	Brain Anterior Caudate	brain
46	chr15:73588000-73596200	Weak transcription	Primary B cells from cord blood	blood
47	chr15:73588400-73598000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:73588600-73594600	Weak transcription	HepG2	liver
49	chr15:73588600-73598200	Weak transcription	Hela-S3	cervix
50	chr15:73588600-73598600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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