Variant report

Variant	rs11632079
Chromosome Location	chr15:73363387-73363388
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73361985..73364590-chr15:73365433..73367284,2	K562	blood:
2	chr15:73361829..73364780-chr17:57931295..57933567,2	MCF-7	breast:
3	chr15:73343705..73346818-chr15:73362401..73364225,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11630441	0.90[AMR][1000 genomes]
rs11630460	1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11630572	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11632354	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11632433	0.85[CEU][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11637722	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11856233	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11857768	0.85[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12902056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12903656	0.81[EUR][1000 genomes]
rs12908199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12909626	0.87[CEU][hapmap]
rs12912599	0.85[EUR][1000 genomes]
rs12913381	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12914663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34160980	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34182754	0.93[AMR][1000 genomes]
rs34291790	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34326722	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34355572	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427117	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34431223	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34649871	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35082203	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35133756	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs35660974	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35767004	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35768298	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36045491	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4625692	1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs66473967	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68000913	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68139669	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71397276	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71397277	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741411	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72741417	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72741432	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7495433	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024434	0.82[ASW][hapmap];0.85[CEU][hapmap];0.82[GIH][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs8037213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8039439	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8039533	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8039640	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73349400-73367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:73352000-73365000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:73353800-73363400	Weak transcription	Aorta	Aorta
4	chr15:73353800-73366000	Weak transcription	Fetal Intestine Large	intestine
5	chr15:73353800-73367400	Weak transcription	Fetal Intestine Small	intestine
6	chr15:73354400-73364800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:73355200-73365200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:73355600-73365800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:73358000-73367000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:73359200-73366000	Weak transcription	Fetal Brain Male	brain
11	chr15:73359200-73370600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:73359600-73365400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:73359600-73367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:73359800-73365600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:73360400-73365000	Weak transcription	Brain Angular Gyrus	brain
16	chr15:73361000-73372400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:73361400-73366200	Weak transcription	Brain Anterior Caudate	brain
18	chr15:73363200-73363400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:73363200-73363400	Enhancers	Ovary	ovary
20	chr15:73363200-73363800	Enhancers	Brain Hippocampus Middle	brain
21	chr15:73363200-73363800	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links