Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73230570..73234039-chr15:73235641..73238215,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11632079	0.87[CEU][hapmap]
rs12902056	0.87[CEU][hapmap]
rs12903656	1.00[ASN][1000 genomes]
rs12908090	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12908199	0.87[CEU][hapmap]
rs12909626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913381	1.00[ASN][1000 genomes]
rs12914663	0.87[CEU][hapmap]
rs12917161	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16957509	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34691393	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770199	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846029	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35206920	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35686353	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988290	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36019616	1.00[ASN][1000 genomes]
rs36048782	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4636887	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176144	1.00[ASN][1000 genomes]
rs7179577	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739406	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037213	0.87[CEU][hapmap]
rs8039439	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs8039533	0.87[CEU][hapmap]
rs8039640	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73229400-73238200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: