Variant report
| Variant | rs34691393 |
|---|---|
| Chromosome Location | chr15:73237392-73237393 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:73230570..73234039-chr15:73235641..73238215,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12903656 | 1.00[ASN][1000 genomes] |
| rs12908090 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12909626 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12913381 | 1.00[ASN][1000 genomes] |
| rs12913589 | 0.83[EUR][1000 genomes] |
| rs12917161 | 1.00[ASN][1000 genomes] |
| rs16957509 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2415214 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34770199 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34846029 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35206920 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35686353 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35988290 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36019616 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36048782 | 1.00[ASN][1000 genomes] |
| rs4636887 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67210936 | 0.82[AMR][1000 genomes] |
| rs7176144 | 1.00[ASN][1000 genomes] |
| rs7179577 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72739406 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3352103 | chr15:73191535-73454001 | Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:73229400-73238200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
