Variant report

Variant	rs12913589
Chromosome Location	chr15:73267452-73267453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12324130	0.82[AMR][1000 genomes]
rs12904681	0.82[AMR][1000 genomes]
rs12908090	0.87[EUR][1000 genomes]
rs12909626	0.85[EUR][1000 genomes]
rs16957509	0.85[EUR][1000 genomes]
rs28394578	0.81[ASN][1000 genomes]
rs28433073	0.81[ASN][1000 genomes]
rs28459812	0.81[ASN][1000 genomes]
rs28523657	0.85[ASN][1000 genomes]
rs28544903	0.90[ASN][1000 genomes]
rs28620978	0.81[ASN][1000 genomes]
rs28623258	0.81[ASN][1000 genomes]
rs28756233	0.81[ASN][1000 genomes]
rs28888396	0.82[AMR][1000 genomes]
rs34691393	0.83[EUR][1000 genomes]
rs34770199	0.85[EUR][1000 genomes]
rs34846029	0.90[EUR][1000 genomes]
rs35206920	0.83[EUR][1000 genomes]
rs35686353	0.83[EUR][1000 genomes]
rs35988290	0.83[EUR][1000 genomes]
rs4636887	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7171947	0.82[AMR][1000 genomes]
rs7172629	0.82[AMR][1000 genomes]
rs7179577	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72739406	0.83[EUR][1000 genomes]
rs72739431	0.85[ASN][1000 genomes]
rs72739432	0.85[ASN][1000 genomes]
rs8025665	0.85[YRI][hapmap]
rs9920142	0.81[ASN][1000 genomes]
rs9920504	0.82[AMR][1000 genomes]
rs9920548	0.84[AMR][1000 genomes]
rs9921028	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73264000-73267600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:73264200-73268600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:73264800-73268000	Weak transcription	Aorta	Aorta
4	chr15:73264800-73269400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:73265000-73268400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:73265200-73268200	Weak transcription	Fetal Brain Female	brain
7	chr15:73266000-73270200	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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