Variant report

Variant	rs28544903
Chromosome Location	chr15:73268579-73268580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73261869..73264413-chr15:73266352..73269682,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12913589	0.90[ASN][1000 genomes]
rs13329550	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13329560	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28386776	1.00[EUR][1000 genomes]
rs28393049	1.00[EUR][1000 genomes]
rs28394578	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28394758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28433073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28435445	0.83[EUR][1000 genomes]
rs28440854	1.00[AFR][1000 genomes]
rs28459812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28463732	1.00[EUR][1000 genomes]
rs28523657	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28546255	1.00[EUR][1000 genomes]
rs28620978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28623258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28671520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28683177	1.00[EUR][1000 genomes]
rs28756233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6495043	0.83[EUR][1000 genomes]
rs7167281	0.83[EUR][1000 genomes]
rs72739431	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72739432	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8034265	1.00[EUR][1000 genomes]
rs8036599	0.83[EUR][1000 genomes]
rs8041362	0.83[EUR][1000 genomes]
rs9919970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9920142	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9920205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73264200-73268600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:73264800-73269400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:73266000-73270200	Weak transcription	Fetal Brain Male	brain
4	chr15:73268200-73269400	Enhancers	Fetal Brain Female	brain

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