Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13329550	0.83[EUR][1000 genomes]
rs13329560	0.83[EUR][1000 genomes]
rs28386776	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393049	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394578	0.83[EUR][1000 genomes]
rs28394758	0.83[EUR][1000 genomes]
rs28433073	0.83[EUR][1000 genomes]
rs28435445	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459812	0.83[EUR][1000 genomes]
rs28463732	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28523657	0.83[EUR][1000 genomes]
rs28544903	0.83[EUR][1000 genomes]
rs28546255	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620978	0.83[EUR][1000 genomes]
rs28623258	0.83[EUR][1000 genomes]
rs28671520	0.83[EUR][1000 genomes]
rs28683177	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756233	0.83[EUR][1000 genomes]
rs6495043	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72739431	0.83[EUR][1000 genomes]
rs72739432	0.83[EUR][1000 genomes]
rs8034265	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036599	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8041362	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9919970	0.83[EUR][1000 genomes]
rs9920142	0.83[EUR][1000 genomes]
rs9920205	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73301800-73310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:73303400-73313200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:73303600-73305000	Weak transcription	Right Atrium	heart
4	chr15:73303600-73313600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: