Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73307241..73310100-chr15:73342597..73345585,3	MCF-7	breast:
2	chr15:73308586..73310099-chr15:73313324..73315028,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13329550	1.00[EUR][1000 genomes]
rs13329560	1.00[EUR][1000 genomes]
rs28386776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394578	1.00[EUR][1000 genomes]
rs28394758	1.00[EUR][1000 genomes]
rs28433073	1.00[EUR][1000 genomes]
rs28435445	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459812	1.00[EUR][1000 genomes]
rs28523657	1.00[EUR][1000 genomes]
rs28544903	1.00[EUR][1000 genomes]
rs28546255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620978	1.00[EUR][1000 genomes]
rs28623258	1.00[EUR][1000 genomes]
rs28671520	1.00[EUR][1000 genomes]
rs28683177	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756233	1.00[EUR][1000 genomes]
rs6495043	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7167281	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739431	1.00[EUR][1000 genomes]
rs72739432	1.00[EUR][1000 genomes]
rs8034265	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036599	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8041362	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9919970	1.00[EUR][1000 genomes]
rs9920142	1.00[EUR][1000 genomes]
rs9920205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73301800-73310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:73303400-73313200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:73303600-73313600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:73307400-73312000	Weak transcription	Fetal Brain Female	brain
5	chr15:73307400-73313200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:73309000-73313600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:73309800-73311000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:73310000-73310600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:73310000-73311200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr15:73310000-73311400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: