Variant report

Variant	rs28386776
Chromosome Location	chr15:73313006-73313007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73312385..73315201-chr15:73317678..73319945,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13329550	1.00[EUR][1000 genomes]
rs13329560	1.00[EUR][1000 genomes]
rs28393049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394578	1.00[EUR][1000 genomes]
rs28394758	1.00[EUR][1000 genomes]
rs28433073	1.00[EUR][1000 genomes]
rs28435445	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28459812	1.00[EUR][1000 genomes]
rs28463732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28523657	1.00[EUR][1000 genomes]
rs28544903	1.00[EUR][1000 genomes]
rs28546255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620978	1.00[EUR][1000 genomes]
rs28623258	1.00[EUR][1000 genomes]
rs28671520	1.00[EUR][1000 genomes]
rs28683177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28756233	1.00[EUR][1000 genomes]
rs6495043	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7167281	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72739432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034265	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036599	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8041362	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9919970	1.00[EUR][1000 genomes]
rs9920142	1.00[EUR][1000 genomes]
rs9920205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73303400-73313200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:73303600-73313600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:73307400-73313200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:73309000-73313600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73310800-73313200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:73311600-73313400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:73312000-73313200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:73312200-73313400	Weak transcription	Fetal Brain Female	brain
9	chr15:73312400-73313400	Enhancers	Brain Hippocampus Middle	brain
10	chr15:73312400-73315200	Enhancers	Brain Substantia Nigra	brain
11	chr15:73312600-73313200	Enhancers	HepG2	liver
12	chr15:73312600-73313800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr15:73312600-73315800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:73312800-73313200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:73312800-73313200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr15:73312800-73313200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr15:73312800-73313200	Weak transcription	Brain Anterior Caudate	brain
18	chr15:73312800-73313400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:73312800-73313600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr15:73312800-73313600	Enhancers	Brain Cingulate Gyrus	brain
21	chr15:73312800-73314400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr15:73312800-73315000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr15:73312800-73316800	Enhancers	Fetal Brain Male	brain
24	chr15:73313000-73313600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:73313000-73314000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:73313000-73315000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr15:73313000-73315000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr15:73313000-73315000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr15:73313000-73315200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:73313000-73316400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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