Variant report

Variant	rs28671520
Chromosome Location	chr15:73288273-73288274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73283925..73285701-chr15:73287876..73289544,2	K562	blood:
2	chr15:73281450..73284379-chr15:73286906..73289508,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13329550	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13329560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28386776	1.00[EUR][1000 genomes]
rs28393049	1.00[EUR][1000 genomes]
rs28394578	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28394758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433073	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28435445	0.83[EUR][1000 genomes]
rs28440854	0.96[AFR][1000 genomes]
rs28459812	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28463732	1.00[EUR][1000 genomes]
rs28523657	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28544903	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28546255	1.00[EUR][1000 genomes]
rs28620978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28623258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28683177	1.00[EUR][1000 genomes]
rs28756233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495043	0.83[EUR][1000 genomes]
rs7167281	0.83[EUR][1000 genomes]
rs72739431	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72739432	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8034265	1.00[EUR][1000 genomes]
rs8036599	0.83[EUR][1000 genomes]
rs8041362	0.83[EUR][1000 genomes]
rs9919970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9920205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73284000-73289800	Enhancers	Fetal Lung	lung
2	chr15:73284000-73294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:73284400-73290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:73284600-73290400	Enhancers	Fetal Stomach	stomach
5	chr15:73284800-73288800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr15:73285000-73289200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:73285000-73292400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:73286000-73288800	Enhancers	Stomach Mucosa	stomach
9	chr15:73286200-73288400	Enhancers	Fetal Brain Male	brain
10	chr15:73287200-73290000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:73287400-73288400	Enhancers	Colon Smooth Muscle	Colon
12	chr15:73287400-73292600	Weak transcription	Aorta	Aorta
13	chr15:73287600-73292600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:73287800-73288400	Enhancers	Fetal Heart	heart
15	chr15:73287800-73290200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:73287800-73290200	Weak transcription	NHEK	skin
17	chr15:73287800-73290400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:73288000-73288400	Enhancers	Brain Substantia Nigra	brain
19	chr15:73288000-73288600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:73288000-73288600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr15:73288200-73289200	Weak transcription	Ovary	ovary
22	chr15:73288200-73289400	Enhancers	Fetal Thymus	thymus
23	chr15:73288200-73291400	Weak transcription	Fetal Intestine Small	intestine
24	chr15:73288200-73292200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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