Variant report

Variant	rs6495043
Chromosome Location	chr15:73302841-73302842
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13329550	0.83[EUR][1000 genomes]
rs13329560	0.83[EUR][1000 genomes]
rs28386776	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28393049	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28394578	0.83[EUR][1000 genomes]
rs28394758	0.83[EUR][1000 genomes]
rs28433073	0.83[EUR][1000 genomes]
rs28435445	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28459812	0.83[EUR][1000 genomes]
rs28463732	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28523657	0.83[EUR][1000 genomes]
rs28544903	0.83[EUR][1000 genomes]
rs28546255	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28620978	0.83[EUR][1000 genomes]
rs28623258	0.83[EUR][1000 genomes]
rs28671520	0.83[EUR][1000 genomes]
rs28683177	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28756233	0.83[EUR][1000 genomes]
rs7167281	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72739431	0.83[EUR][1000 genomes]
rs72739432	0.83[EUR][1000 genomes]
rs8034265	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8036599	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041362	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919970	0.83[EUR][1000 genomes]
rs9920142	0.83[EUR][1000 genomes]
rs9920205	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73298400-73303200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:73301200-73303200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:73301400-73303200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:73301400-73303400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:73301400-73303600	Enhancers	Fetal Stomach	stomach
6	chr15:73301400-73303600	Enhancers	HMEC	breast
7	chr15:73301600-73303200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:73301600-73303200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:73301600-73303400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:73301800-73303200	Enhancers	Aorta	Aorta
11	chr15:73301800-73310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:73302000-73303000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:73302000-73303000	Weak transcription	Psoas Muscle	Psoas
14	chr15:73302000-73303000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr15:73302200-73303000	Weak transcription	Fetal Lung	lung
16	chr15:73302200-73303600	Enhancers	Fetal Muscle Leg	muscle
17	chr15:73302600-73303400	Enhancers	Fetal Heart	heart
18	chr15:73302600-73303400	Enhancers	NHEK	skin
19	chr15:73302800-73303000	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr15:73302800-73303000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr15:73302800-73303000	Enhancers	A549	lung
22	chr15:73302800-73303400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:73302800-73303600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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