Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73292315..73294448-chr15:73297125..73298868,2	MCF-7	breast:
2	chr15:73292066..73293935-chr15:73328471..73331128,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12324130	0.94[ASN][1000 genomes]
rs12904681	0.94[ASN][1000 genomes]
rs28437572	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496484	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625503	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661567	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668448	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687436	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687996	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28888396	0.94[ASN][1000 genomes]
rs7171947	0.94[ASN][1000 genomes]
rs7172316	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172629	0.94[ASN][1000 genomes]
rs7174900	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038862	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920504	0.94[ASN][1000 genomes]
rs9920548	0.94[ASN][1000 genomes]
rs9920701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920770	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920771	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921028	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73284000-73294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:73290400-73293800	Enhancers	Fetal Brain Male	brain
3	chr15:73291200-73294800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:73291200-73295000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73291600-73294400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr15:73292200-73294600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:73292200-73296800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:73292800-73297600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:73292800-73301400	Weak transcription	Fetal Stomach	stomach

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