Variant report

Variant	nsv960860
Chromosome Location	chr19:52643619-52646538
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr19:52646243-52646379	K562	blood:	n/a	n/a
2	BHLHE40	chr19:52643642-52643931	HepG2	liver:	n/a	n/a
3	CBX3	chr19:52646143-52646456	K562	blood:	n/a	n/a
4	CBX3	chr19:52642814-52643788	K562	blood:	n/a	n/a
5	CHD2	chr19:52643523-52643704	HepG2	liver:	n/a	n/a
6	CTCF	chr19:52645192-52645270	LNCaP	prostate:	n/a	n/a
7	CTCF	chr19:52641855-52643735	SK-N-SH	brain:	n/a	chr19:52643227-52643237
8	ELF1	chr19:52646049-52646442	K562	blood:	n/a	chr19:52646241-52646254 chr19:52646258-52646271
9	ELF1	chr19:52643573-52643828	K562	blood:	n/a	chr19:52643721-52643734
10	ELF1	chr19:52643485-52644005	HepG2	liver:	n/a	chr19:52643721-52643734
11	ELF1	chr19:52643551-52643905	HepG2	liver:	n/a	chr19:52643721-52643734
12	FOS	chr19:52645551-52645581	MCF10A-Er-Src	breast:	n/a	n/a
13	FOXA1	chr19:52643215-52643705	HepG2	liver:	n/a	n/a
14	FOXA1	chr19:52643135-52643963	HepG2	liver:	n/a	n/a
15	FOXA1	chr19:52643230-52643681	HepG2	liver:	n/a	n/a
16	FOXA2	chr19:52643582-52643905	HepG2	liver:	n/a	n/a
17	GABPA	chr19:52642145-52643658	MCF-7	breast:	n/a	chr19:52643231-52643240
18	GABPA	chr19:52646149-52646333	HepG2	liver:	n/a	n/a
19	GABPA	chr19:52646145-52646357	K562	blood:	n/a	n/a
20	GABPA	chr19:52646179-52646320	GM12878	blood:	n/a	n/a
21	GABPA	chr19:52646161-52646305	HepG2	liver:	n/a	n/a
22	GABPA	chr19:52646153-52646363	Hela-S3	cervix:	n/a	n/a
23	GABPA	chr19:52646153-52646277	GM12878	blood:	n/a	n/a
24	GABPA	chr19:52646185-52646287	Hela-S3	cervix:	n/a	n/a
25	GATA3	chr19:52645222-52645630	T-47D	breast:	n/a	n/a
26	GATA3	chr19:52645203-52645680	T-47D	breast:	n/a	n/a
27	HEY1	chr19:52642878-52643659	HepG2	liver:	n/a	n/a
28	HEY1	chr19:52646148-52646388	K562	blood:	n/a	n/a
29	HEY1	chr19:52646149-52646461	K562	blood:	n/a	n/a
30	JUND	chr19:52642503-52643795	H1-hESC	embryonic stem cell:	n/a	n/a
31	MAX	chr19:52641896-52643743	NB4	blood:	n/a	chr19:52642119-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642115-52642134 chr19:52642120-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642120-52642129 chr19:52642120-52642130
32	MAX	chr19:52646245-52646367	K562	blood:	n/a	n/a
33	MAX	chr19:52641744-52643999	HepG2	liver:	n/a	chr19:52642119-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642115-52642134 chr19:52642120-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642120-52642129 chr19:52642120-52642130
34	MAX	chr19:52641944-52643907	HepG2	liver:	n/a	chr19:52642119-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642115-52642134 chr19:52642120-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642120-52642129 chr19:52642120-52642130
35	MAX	chr19:52643445-52643641	H1-hESC	embryonic stem cell:	n/a	n/a
36	MAZ	chr19:52641235-52643712	IMR90	lung:	n/a	chr19:52642119-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642115-52642134 chr19:52642120-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642120-52642129 chr19:52642120-52642130
37	MAZ	chr19:52645677-52645864	HepG2	liver:	n/a	n/a
38	MAZ	chr19:52641937-52643651	GM12878	blood:	n/a	chr19:52642119-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642115-52642134 chr19:52642120-52642130 chr19:52642119-52642130 chr19:52642120-52642129 chr19:52642120-52642129 chr19:52642120-52642130
39	MXI1	chr19:52641847-52643699	GM12878	blood:	n/a	chr19:52642119-52642128 chr19:52642121-52642130
40	MXI1	chr19:52641181-52643947	SK-N-SH	brain:	n/a	chr19:52642119-52642128 chr19:52642121-52642130
41	MXI1	chr19:52641948-52643950	HepG2	liver:	n/a	chr19:52642119-52642128 chr19:52642121-52642130
42	MXI1	chr19:52641433-52644116	IMR90	lung:	n/a	chr19:52642119-52642128 chr19:52642121-52642130
43	MYC	chr19:52646153-52646266	MCF-7	breast:	n/a	n/a
44	MYC	chr19:52643062-52643619	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr19:52646201-52646261	A549	lung:	n/a	n/a
46	POLR2A	chr19:52642361-52643677	HepG2	liver:	n/a	n/a
47	POLR2A	chr19:52641877-52643640	HepG2	liver:	n/a	n/a
48	POLR2A	chr19:52642026-52643814	Raji	blood:	n/a	n/a
49	POLR2A	chr19:52646111-52646477	GM12878	blood:	n/a	n/a
50	POLR2A	chr19:52646235-52646263	Hela-S3	cervix:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52646265-52646315	HPAEpiC	pulmonary alveolar:	n/a
2	chr19:52646265-52646315	SK-N-SH_RA	brain:	n/a
3	chr19:52646265-52646315	HepG2	liver:	n/a
4	chr19:52646265-52646315	NT2-D1	testis:	n/a
5	chr19:52646265-52646315	HCM	heart:	n/a
6	chr19:52646265-52646315	NH-A	brain:	n/a
7	chr19:52646265-52646315	PFSK-1	brain:	n/a
8	chr19:52646265-52646315	H1-hESC	embryonic stem cell:	embryo
9	chr19:52646265-52646315	ECC-1	luminal epithelium:	n/a
10	chr19:52646265-52646315	HRCEpiC	kidney:	n/a
11	chr19:52646265-52646315	BJ	skin:	n/a
12	chr19:52646265-52646315	NHBE	bronchial:	n/a
13	chr19:52646265-52646315	MCF10A-Er-Src	breast:	n/a
14	chr19:52646265-52646315	HAEpiC	amniotic membrane:	n/a
15	chr19:52646265-52646315	BE2_C	brain:	n/a
16	chr19:52646265-52646315	MCF-7	breast:	n/a
17	chr19:52646265-52646315	K562	blood:	n/a
18	chr19:52646265-52646315	ProgFib	skin:	n/a
19	chr19:52646265-52646315	PrEC	prostate:	n/a
20	chr19:52646265-52646315	SK-N-MC	brain:	n/a
21	chr19:52646265-52646315	PANC-1	pancreas:	n/a
22	chr19:52646265-52646315	CMK	blood:	n/a
23	chr19:52646265-52646315	AG09319	gingival:	n/a
24	chr19:52646265-52646315	HCPEpiC	choroid plexus:	n/a
25	chr19:52646265-52646315	HCT-116	colon:	n/a
26	chr19:52646265-52646315	IMR90	lung:	fetal
27	chr19:52646265-52646315	HL-60	blood:	n/a
28	chr19:52646265-52646315	HEK293	kidney:	embryo
29	chr19:52646265-52646315	GM12878	blood:	n/a
30	chr19:52646265-52646315	U87	brain:	n/a
31	chr19:52646265-52646315	Hela-S3	cervix:	n/a
32	chr19:52646265-52646315	T-47D	breast:	n/a
33	chr19:52646265-52646315	NB4	blood:	n/a
34	chr19:52646265-52646315	GM06990	blood:	n/a
35	chr19:52646265-52646315	HRE	kidney:	n/a
36	chr19:52646265-52646315	LNCaP	prostate:	n/a
37	chr19:52646265-52646315	Caco-2	colon:	n/a
38	chr19:52646265-52646315	ovcar-3	ovarian:	n/a
39	chr19:52646265-52646315	HCF	heart:	n/a
40	chr19:52646265-52646315	AG04449	skin:	fetal
41	chr19:52646265-52646315	GM12891	blood:	n/a
42	chr19:52646265-52646315	AG10803	skin:	n/a
43	chr19:52646265-52646315	HNPCEpiC	eye:	n/a
44	chr19:52646265-52646315	HUVEC	blood vessel:	n/a
45	chr19:52646265-52646315	AG09309	skin:	n/a
46	chr19:52646265-52646315	HRPEpiC	eye:	n/a
47	chr19:52646265-52646315	HIPEpiC	eye:	n/a
48	chr19:52646265-52646315	SKMC	muscle:	n/a
49	chr19:52646265-52646315	Jurkat	blood:	n/a
50	chr19:52646265-52646315	AoSMC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:52641479..52644491-chr19:52690575..52695402,7	MCF-7	breast:
2	chr19:52530143..52532908-chr19:52641672..52644028,3	K562	blood:
3	chr19:52641710..52644473-chr19:52838292..52841252,2	MCF-7	breast:
4	chr19:52636537..52639802-chr19:52640245..52644732,7	K562	blood:
5	chr19:52641405..52644253-chr19:52691691..52696539,6	MCF-7	breast:
6	chr19:52633223..52639825-chr19:52641959..52644424,7	MCF-7	breast:
7	chr19:52551561..52553801-chr19:52643165..52644706,2	K562	blood:
8	chr19:52597551..52599096-chr19:52643130..52644965,2	K562	blood:
9	chr19:52641278..52644856-chr19:52672246..52674908,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPP2R1A-3	chr19:52645879-52645970	ENSG00000268458.1
2	lnc-PPP2R1A-2	chr19:52646296-52646589	NONHSAT067520

Variant related genes	Relation type
ENSG00000268458	TF binding region
ZNF616	TF binding region
RPL37P23	TF binding region
ENSG00000268458	CpG island
ZNF616	CpG island
RPL37P23	CpG island
ENSG00000167554	chromatin interactions
ENSG00000105568	chromatin interactions
ENSG00000197608	chromatin interactions
ENSG00000196267	chromatin interactions
ENSG00000238630	chromatin interactions
ENSG00000267827	chromatin interactions
ENSG00000267927	chromatin interactions
ENSG00000142556	chromatin interactions
ENSG00000256087	chromatin interactions

Extended variants
information (count: 93 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:93 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11878746	chr19:52643637-52643638	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs188540860	chr19:52643645-52643646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
3	rs571580610	chr19:52643665-52643666	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
4	rs369289052	chr19:52643667-52643668	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
5	rs560719065	chr19:52643680-52643681	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
6	rs142794261	chr19:52643715-52643716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
7	rs546558194	chr19:52643738-52643739	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
8	rs192876588	chr19:52643772-52643773	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
9	rs375054022	chr19:52643784-52643785	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
10	rs76669936	chr19:52643813-52643814	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
11	rs368243779	chr19:52643946-52643947	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
12	rs549579748	chr19:52643947-52643948	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
13	rs533760656	chr19:52643963-52643964	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
14	rs561832731	chr19:52644028-52644029	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
15	rs184322313	chr19:52644077-52644078	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
16	rs111611820	chr19:52644095-52644096	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
17	rs546986799	chr19:52644101-52644102	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
18	rs187175432	chr19:52644104-52644105	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
19	rs147493080	chr19:52644110-52644111	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
20	rs139970767	chr19:52644117-52644118	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
21	rs200258622	chr19:52644128-52644129	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
22	rs551682113	chr19:52644157-52644158	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
23	rs191451185	chr19:52644186-52644187	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
24	rs112236954	chr19:52644203-52644204	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
25	rs7252739	chr19:52644252-52644253	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
26	rs556340159	chr19:52644264-52644265	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
27	rs574987554	chr19:52644330-52644331	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
28	rs143885498	chr19:52644454-52644455	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
29	rs554197214	chr19:52644456-52644457	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
30	rs572504293	chr19:52644458-52644459	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
31	rs183643291	chr19:52644463-52644464	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
32	rs564818645	chr19:52644468-52644469	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
33	rs34164147	chr19:52644490-52644491	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
34	rs543893903	chr19:52644552-52644553	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs576521522	chr19:52644567-52644568	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
36	rs201817401	chr19:52644599-52644600	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
37	rs553535299	chr19:52644610-52644611	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
38	rs543999302	chr19:52644633-52644634	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs562191980	chr19:52644639-52644640	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs150616451	chr19:52644657-52644658	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
41	rs547124661	chr19:52644692-52644693	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
42	rs558901538	chr19:52644757-52644758	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
43	rs199872078	chr19:52644780-52644781	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
44	rs562197283	chr19:52644860-52644861	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs113758889	chr19:52644877-52644878	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs190456328	chr19:52644973-52644974	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs569940468	chr19:52644978-52644979	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs1007485	chr19:52645006-52645007	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs12979198	chr19:52645150-52645151	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs111463681	chr19:52645200-52645201	Weak transcription Enhancers	TF binding region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:204 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52641200-52643800	Active TSS	NH-A	brain
2	chr19:52641200-52644000	Active TSS	Muscle Satellite Cultured Cells	--
3	chr19:52641400-52643800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr19:52641400-52643800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr19:52641400-52643800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:52641400-52644000	Active TSS	HSMMtube	muscle
7	chr19:52641600-52643800	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr19:52641600-52643800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr19:52641600-52643800	Active TSS	Colonic Mucosa	Colon
10	chr19:52641600-52643800	Active TSS	Fetal Intestine Small	intestine
11	chr19:52641600-52643800	Active TSS	Right Ventricle	heart
12	chr19:52641600-52644000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:52641600-52644000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr19:52641600-52644000	ZNF genes & repeats	A549	lung
15	chr19:52641600-52644200	Active TSS	Psoas Muscle	Psoas
16	chr19:52641800-52643800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr19:52641800-52643800	Active TSS	Ovary	ovary
18	chr19:52641800-52644200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr19:52642000-52644000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr19:52642200-52643800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr19:52642200-52643800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:52642200-52644000	Active TSS	Brain Cingulate Gyrus	brain
23	chr19:52642200-52644200	Active TSS	Stomach Smooth Muscle	stomach
24	chr19:52642400-52644000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr19:52642600-52643800	Active TSS	Pancreas	Pancrea
26	chr19:52642600-52643800	Active TSS	Thymus	Thymus
27	chr19:52642600-52644000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr19:52643000-52643800	Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr19:52643000-52644000	Active TSS	Monocytes-CD14+_RO01746	blood
30	chr19:52643200-52643800	Active TSS	Right Atrium	heart
31	chr19:52643200-52644800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:52643200-52645800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr19:52643400-52643800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr19:52643400-52643800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr19:52643400-52643800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr19:52643400-52643800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr19:52643400-52643800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr19:52643400-52643800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr19:52643400-52643800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:52643400-52643800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr19:52643400-52643800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr19:52643400-52643800	Flanking Active TSS	Fetal Heart	heart
43	chr19:52643400-52643800	Flanking Active TSS	Fetal Kidney	kidney
44	chr19:52643400-52643800	Flanking Active TSS	Fetal Lung	lung
45	chr19:52643400-52643800	Flanking Active TSS	Fetal Muscle Leg	muscle
46	chr19:52643400-52643800	Enhancers	Gastric	stomach
47	chr19:52643400-52643800	Flanking Active TSS	K562	blood
48	chr19:52643400-52643800	Flanking Active TSS	NHEK	skin
49	chr19:52643400-52644000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr19:52643400-52644000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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