Variant report

Variant rs556340159
Chromosome Location chr19:52644264-52644265
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:26 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:52643200-52644800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr19:52643200-52645800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr19:52643400-52644400 Enhancers Lung lung
4 chr19:52643400-52645200 Enhancers Placenta Amnion Placenta Amnion
5 chr19:52643600-52644400 Enhancers Primary T regulatory cells fromperipheralblood blood
6 chr19:52643600-52645000 Enhancers Placenta Placenta
7 chr19:52643800-52644400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
8 chr19:52643800-52644400 Enhancers Rectal Mucosa Donor 31 rectum
9 chr19:52643800-52645200 Enhancers Fetal Adrenal Gland Adrenal Gland
10 chr19:52643800-52646200 Weak transcription Thymus Thymus
11 chr19:52644000-52644400 Enhancers Breast Myoepithelial Primary Cells Breast
12 chr19:52644000-52644400 Enhancers Primary T killer memory cells from peripheral blood blood
13 chr19:52644000-52644400 Enhancers Dnd41 blood
14 chr19:52644000-52644600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
15 chr19:52644000-52644600 Enhancers HepG2 liver
16 chr19:52644000-52644800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr19:52644000-52645800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr19:52644000-52647200 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr19:52644000-52650200 Weak transcription Rectal Smooth Muscle rectum
20 chr19:52644000-52658000 Weak transcription Fetal Kidney kidney
21 chr19:52644000-52658400 Weak transcription Brain Substantia Nigra brain
22 chr19:52644000-52658800 Weak transcription Right Ventricle heart
23 chr19:52644200-52644400 Enhancers Psoas Muscle Psoas
24 chr19:52644200-52644400 Enhancers Skeletal Muscle Female skeletal muscle
25 chr19:52644200-52656800 Weak transcription Brain Germinal Matrix brain
26 chr19:52644200-52658200 Weak transcription Right Atrium heart

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