Variant report
| Variant | nsv961047 |
|---|---|
| Chromosome Location | chr18:45156536-45157154 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-KATNAL2-11 | chr18:45156483-45157219 | NONHSAT059166 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs557423349 | chr18:45156544-45156545 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs558477331 | chr18:45156567-45156568 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs16956000 | chr18:45156581-45156582 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs140990303 | chr18:45156588-45156589 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs559992044 | chr18:45156613-45156614 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs144700664 | chr18:45156655-45156656 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs575391721 | chr18:45156659-45156660 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs72661113 | chr18:45156692-45156693 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs565502482 | chr18:45156709-45156710 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs138588434 | chr18:45156738-45156739 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs148834750 | chr18:45156757-45156758 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs551860973 | chr18:45156771-45156772 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs143424501 | chr18:45156822-45156823 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs527686407 | chr18:45156845-45156846 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs180800847 | chr18:45156856-45156857 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs187643135 | chr18:45156857-45156858 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs530435289 | chr18:45156891-45156892 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs554627678 | chr18:45156924-45156925 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs398122491 | chr18:45156942-45156943 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs191954073 | chr18:45156966-45156967 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 21 | rs374275846 | chr18:45156969-45156970 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 22 | rs537504178 | chr18:45157043-45157044 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 23 | rs148377645 | chr18:45157055-45157056 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 24 | rs571281589 | chr18:45157067-45157068 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 25 | rs533527134 | chr18:45157092-45157093 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 26 | rs445494 | chr18:45157099-45157100 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 27 | rs72659401 | chr18:45157103-45157104 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 28 | rs573569206 | chr18:45157117-45157118 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 29 | rs29001611 | chr18:45157125-45157126 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:90)
| Disease | PMID | Source |
|---|---|---|
| Follicular lymphoma | 20505157 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Cancer | 21637783 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Splenic marginal zone lymphoma | 21957467 | CNVD |
| Trisomy 18 syndrome | 17576883 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Barrett''s syndrome | 19417022 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Melanoma | 18172304 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| 18q deletion syndrome | 19533772 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Colorectal cancer | 21102417 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Pancreatic cancer | 21811562 | CNVD |
| Basal cell lymphoma | 21115979 | CNVD |
| Mucosa-associated lymphoid tissue lymphomas | 21459788 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| colon cancer | 17210682 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Autism | 16446308 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Medulloblastoma | 18056178 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Cancer | 16751803 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Colorectal cancer | 21297112 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Colorectal cancer | 19150955 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Colorectal cancer | 16912164 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Seminomas | 18059402 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Breast cancer | 17133270 | CNVD |
| prenatal diagnosis | 22389664 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| Neuroblastoma | 21508638 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Chronic lymphocytic leukemia | 21049055 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
| Pilomyxoid astrocytoma | 17436254 | CNVD |
| Mental retardation | 21062444 | CNVD |
| Cancer | 21183584 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Esophageal adenocarcinoma | 18519675 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Basal cell lymphoma | 19029149 | CNVD |
| Diffuse large b-cell lymphoma | 19029149 | CNVD |
| Cancer | 17160897 | CNVD |
| Congenital anomalies of the kidney and urinary tract | 20467480 | CNVD |
| Gastric cancer | 16891809 | CNVD |
| Idiopathic thrombocytopenic purpura | 19566914 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Follicular lymphoma | 17170743 | CNVD |
| Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Lung cancer | 21569311 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Cancer | 20164919 | CNVD |
| Intellectual disability | 21811512 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
