Variant report
| Variant | rs16956000 |
|---|---|
| Chromosome Location | chr18:45156581-45156582 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-KATNAL2-11 | chr18:45156483-45157219 | NONHSAT059166 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10502886 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28444636 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56330224 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57391572 | 0.82[AFR][1000 genomes] |
| rs7227134 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7242884 | 0.86[YRI][hapmap] |
| rs7244405 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73953281 | 0.88[AFR][1000 genomes] |
| rs8088535 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9945915 | 0.92[AFR][1000 genomes] |
| rs9946150 | 0.89[AFR][1000 genomes] |
| rs9948880 | 0.89[AFR][1000 genomes] |
| rs9956762 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9961540 | 1.00[YRI][hapmap] |
| rs9961544 | 1.00[YRI][hapmap] |
| rs9963571 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv961047 | chr18:45156536-45157154 | Inactive region | lncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
