Variant report

Variant	rs7242884
Chromosome Location	chr18:45226645-45226646
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10502886	0.81[AFR][1000 genomes]
rs28375235	0.99[AFR][1000 genomes]
rs28650034	0.99[AFR][1000 genomes]
rs57391572	0.96[AFR][1000 genomes]
rs7227134	0.81[AFR][1000 genomes]
rs7244405	0.89[AFR][1000 genomes]
rs73953281	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8088535	0.81[AFR][1000 genomes]
rs9946150	0.89[AFR][1000 genomes]
rs9948880	0.89[AFR][1000 genomes]
rs9956201	1.00[MEX][hapmap]
rs9956762	0.89[AFR][1000 genomes]
rs9961540	0.93[YRI][hapmap]
rs9961544	0.93[YRI][hapmap]
rs9963571	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv576823	chr18:45207893-45264035	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45226600-45228400	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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