Variant report

Variant	rs28375235
Chromosome Location	chr18:45216678-45216679
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10502886	0.82[AFR][1000 genomes]
rs28650034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57391572	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7227134	0.82[AFR][1000 genomes]
rs7242884	0.99[AFR][1000 genomes]
rs7244405	0.90[AFR][1000 genomes]
rs73953281	0.92[AFR][1000 genomes]
rs8088535	0.82[AFR][1000 genomes]
rs9946150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9948880	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9956762	0.90[AFR][1000 genomes]
rs9963571	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2286	chr18:45181897-45226628	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3425854	chr18:45188942-45336590	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv576823	chr18:45207893-45264035	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45214800-45217200	Enhancers	Brain Germinal Matrix	brain
2	chr18:45215400-45217400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:45215600-45216800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr18:45215600-45216800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:45215600-45217200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr18:45215800-45217200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:45215800-45218600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr18:45216200-45216800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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