Variant report
| Variant | rs8088535 |
|---|---|
| Chromosome Location | chr18:45193495-45193496 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:45184295..45186855-chr18:45192222..45194798,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10502886 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16956000 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28375235 | 0.82[AFR][1000 genomes] |
| rs28444636 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28650034 | 0.82[AFR][1000 genomes] |
| rs56330224 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57391572 | 0.85[AFR][1000 genomes] |
| rs7227134 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7242884 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs7244405 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73953281 | 0.91[AFR][1000 genomes] |
| rs9945915 | 0.94[AFR][1000 genomes] |
| rs9946150 | 0.92[AFR][1000 genomes] |
| rs9948880 | 0.92[AFR][1000 genomes] |
| rs9956762 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9961540 | 0.93[YRI][hapmap] |
| rs9961544 | 0.93[YRI][hapmap] |
| rs9963571 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv2286 | chr18:45181897-45226628 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3425854 | chr18:45188942-45336590 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:45193200-45194800 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
