Variant report
Variant | nsv963222 |
---|---|
Chromosome Location | chr2:35471871-35474642 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs6737162 | chr2:35472234-35472235 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs563840153 | chr2:35472284-35472285 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs577289624 | chr2:35472294-35472295 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs66512054 | chr2:35472311-35472312 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs559749859 | chr2:35472320-35472321 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs386644759 | chr2:35472321-35472322 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs11690993 | chr2:35472322-35472323 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
8 | rs571552530 | chr2:35472364-35472365 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs6737385 | chr2:35472375-35472376 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
10 | rs550869246 | chr2:35472393-35472394 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs150365810 | chr2:35472415-35472416 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs547095634 | chr2:35472444-35472445 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs6752344 | chr2:35472449-35472450 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs200028094 | chr2:35472452-35472453 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs566829122 | chr2:35472610-35472611 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs78548577 | chr2:35472616-35472617 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs398080164 | chr2:35472617-35472618 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs548033230 | chr2:35472619-35472620 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs535470988 | chr2:35472679-35472680 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs58035631 | chr2:35472695-35472696 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs7560279 | chr2:35472697-35472698 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
22 | rs368416653 | chr2:35472766-35472767 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs371599638 | chr2:35472837-35472838 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs557494313 | chr2:35472853-35472854 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs144757314 | chr2:35472856-35472857 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs539967184 | chr2:35472861-35472862 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs371426741 | chr2:35472868-35472869 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs573590960 | chr2:35472899-35472900 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs542212964 | chr2:35472911-35472912 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs193219654 | chr2:35472912-35472913 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs531079586 | chr2:35472916-35472917 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs7560644 | chr2:35472985-35472986 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
33 | rs7587513 | chr2:35473015-35473016 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs113937711 | chr2:35473026-35473027 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs117251384 | chr2:35473030-35473031 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs7587522 | chr2:35473041-35473042 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
37 | rs535843618 | chr2:35473047-35473048 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs549079472 | chr2:35473091-35473092 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs7590149 | chr2:35473198-35473199 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
40 | rs537785458 | chr2:35473203-35473204 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs551663581 | chr2:35473217-35473218 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs557608372 | chr2:35473223-35473224 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs185643655 | chr2:35473242-35473243 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs533699937 | chr2:35473307-35473308 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs553456163 | chr2:35473309-35473310 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs545461615 | chr2:35473341-35473342 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs377319320 | chr2:35473369-35473370 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs573628478 | chr2:35473373-35473374 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs542625740 | chr2:35473389-35473390 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs190059475 | chr2:35473462-35473463 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Breast cancer | 17393978 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Breast cancer | 17603634 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Lynch syndrome | 18415027 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Adrenal tumor | 17535989 | CNVD |
Breast cancer | 21264507 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Medulloblastoma | 17522785 | CNVD |
Cancer | 23418310 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Ependymoma | 16718352 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Prostate cancer | 18632612 | CNVD |
Bladder cancer | 21909424 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Intellectual disability | 22102821 | CNVD |
Cancer | 20164919 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Autism | 17483303 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
Medulloblastoma | 20607354 | CNVD |
Leukemia | 18628472 | CNVD |
Autism | 19521722 | CNVD |
Autism | 18522746 | CNVD |
Breast cancer | 21364760 | CNVD |
Wilms tumour | 21544195 | CNVD |
Non-small cell lung cancer | 18927303 | CNVD |
Hereditary gingival fibromatosis | 19633868 | CNVD |
Breast cancer | 21785460 | CNVD |
Lung cancer | 18438408 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 21045282 | CNVD |
Prostate cancer | 21965145 | CNVD |
Breast cancer | 16397240 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Neuroblastoma | 21508638 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
Neurocytoma | 17123091 | CNVD |
Autism | 22495309 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:35472200-35474600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |