Variant report

Variant	nsv965109
Chromosome Location	chr3:87926549-87928073
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188921628	chr3:87926577-87926578	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs534765920	chr3:87926609-87926610	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs192065259	chr3:87926621-87926622	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577231750	chr3:87926655-87926656	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs544196498	chr3:87926665-87926666	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544872269	chr3:87926711-87926712	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs556839530	chr3:87926737-87926738	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575052442	chr3:87926752-87926753	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs559010765	chr3:87926755-87926756	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542447830	chr3:87926782-87926783	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs115617794	chr3:87926825-87926826	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184339262	chr3:87926837-87926838	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs73147264	chr3:87926852-87926853	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs188379231	chr3:87926931-87926932	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201991875	chr3:87926935-87926936	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs138747204	chr3:87926957-87926958	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs11929492	chr3:87927033-87927034	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs191736652	chr3:87927084-87927085	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531279915	chr3:87927176-87927177	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs376942929	chr3:87927179-87927180	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs183517736	chr3:87927382-87927383	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs1875715	chr3:87927397-87927398	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs534406369	chr3:87927399-87927400	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574586466	chr3:87927402-87927403	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs141783739	chr3:87927433-87927434	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs540433849	chr3:87927443-87927444	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs570861352	chr3:87927482-87927483	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs377002488	chr3:87927504-87927505	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs2938265	chr3:87927515-87927516	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs146240688	chr3:87927516-87927517	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs536571627	chr3:87927534-87927535	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs532256025	chr3:87927549-87927550	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs181012248	chr3:87927558-87927559	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs554451370	chr3:87927565-87927566	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs187343050	chr3:87927566-87927567	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541138260	chr3:87927640-87927641	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs559891302	chr3:87927642-87927643	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs562178686	chr3:87927644-87927645	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs578041905	chr3:87927677-87927678	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs148756546	chr3:87927706-87927707	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs531184171	chr3:87927714-87927715	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs531092118	chr3:87927718-87927719	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs190568949	chr3:87927742-87927743	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561294110	chr3:87927767-87927768	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs528685139	chr3:87927808-87927809	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs550908456	chr3:87927846-87927847	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs151134274	chr3:87927847-87927848	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs570998466	chr3:87927874-87927875	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111392218	chr3:87927938-87927939	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs76232558	chr3:87928057-87928058	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	21829676	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87924800-87930000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:87925800-87928000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:87926800-87927000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:87927000-87928400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:87928000-87930800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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