Variant report

Variant	rs73147264
Chromosome Location	chr3:87926852-87926853
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12106679	0.84[ASN][1000 genomes]
rs12487603	0.97[ASN][1000 genomes]
rs12488627	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12490381	0.97[ASN][1000 genomes]
rs12491305	0.97[ASN][1000 genomes]
rs12491719	0.97[ASN][1000 genomes]
rs12493624	0.97[ASN][1000 genomes]
rs12493756	0.97[ASN][1000 genomes]
rs12493835	0.97[ASN][1000 genomes]
rs12494085	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2068947	0.84[ASN][1000 genomes]
rs2163422	0.97[ASN][1000 genomes]
rs55780392	0.89[ASN][1000 genomes]
rs55789120	0.97[ASN][1000 genomes]
rs55846051	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55890260	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55915802	0.84[ASN][1000 genomes]
rs55960285	0.97[ASN][1000 genomes]
rs55968109	0.97[ASN][1000 genomes]
rs56063464	0.97[ASN][1000 genomes]
rs56064296	0.84[ASN][1000 genomes]
rs56126309	0.84[ASN][1000 genomes]
rs56204929	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56215818	0.97[ASN][1000 genomes]
rs56231132	0.84[ASN][1000 genomes]
rs56274317	0.84[ASN][1000 genomes]
rs56320121	1.00[ASN][1000 genomes]
rs56357704	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56368064	0.97[ASN][1000 genomes]
rs56381224	0.97[ASN][1000 genomes]
rs56386318	0.97[ASN][1000 genomes]
rs6765538	0.97[ASN][1000 genomes]
rs6776844	0.89[ASN][1000 genomes]
rs73141236	0.97[ASN][1000 genomes]
rs73141241	0.97[ASN][1000 genomes]
rs73141263	0.84[ASN][1000 genomes]
rs73141278	0.84[ASN][1000 genomes]
rs73145256	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145264	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73145290	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73147265	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834756	chr3:87763793-87938179	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1009981	chr3:87821573-88003956	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv536634	chr3:87821573-88003956	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv460757	chr3:87863280-87949733	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv590919	chr3:87863280-87949733	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv967184	chr3:87918245-87937811	ZNF genes & repeats Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv965109	chr3:87926549-87928073	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87924800-87930000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:87925800-87928000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:87926800-87927000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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