Variant report
| Variant | rs56126309 |
|---|---|
| Chromosome Location | chr3:88004165-88004166 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs12106679 | 1.00[ASN][1000 genomes] |
| rs12487603 | 0.87[ASN][1000 genomes] |
| rs12490381 | 0.87[ASN][1000 genomes] |
| rs12491305 | 0.87[ASN][1000 genomes] |
| rs12491719 | 0.87[ASN][1000 genomes] |
| rs12493624 | 0.87[ASN][1000 genomes] |
| rs12493756 | 0.87[ASN][1000 genomes] |
| rs12493835 | 0.87[ASN][1000 genomes] |
| rs2068947 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2163422 | 0.87[ASN][1000 genomes] |
| rs55780392 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs55789120 | 0.87[ASN][1000 genomes] |
| rs55915802 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55960285 | 0.87[ASN][1000 genomes] |
| rs55968109 | 0.87[ASN][1000 genomes] |
| rs56063464 | 0.87[ASN][1000 genomes] |
| rs56064296 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56215818 | 0.87[ASN][1000 genomes] |
| rs56231132 | 1.00[ASN][1000 genomes] |
| rs56274317 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56320121 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs56368064 | 0.87[ASN][1000 genomes] |
| rs56381224 | 0.87[ASN][1000 genomes] |
| rs56386318 | 0.87[ASN][1000 genomes] |
| rs6765538 | 0.87[ASN][1000 genomes] |
| rs6776844 | 0.95[ASN][1000 genomes] |
| rs73141236 | 0.87[ASN][1000 genomes] |
| rs73141241 | 0.87[ASN][1000 genomes] |
| rs73141263 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73141278 | 1.00[ASN][1000 genomes] |
| rs73147264 | 0.84[ASN][1000 genomes] |
| rs73147265 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834758 | chr3:87867363-88014975 | Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv877146 | chr3:87983962-88159835 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:87995600-88011000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 2 | chr3:88000000-88005000 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 3 | chr3:88003000-88006200 | Weak transcription | Primary hematopoietic stem cells | blood |
