Variant report

Variant	rs56231132
Chromosome Location	chr3:88004457-88004458
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88003967..88006763-chr3:88008151..88011087,2	K562	blood:
2	chr3:88003967..88006887-chr3:88008151..88009977,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12106679	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487603	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12490381	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12491305	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12491719	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12493624	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12493756	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12493835	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2068947	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163422	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55780392	0.95[ASN][1000 genomes]
rs55789120	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55915802	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960285	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55968109	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56063464	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56064296	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56126309	1.00[ASN][1000 genomes]
rs56215818	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56274317	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56320121	0.84[ASN][1000 genomes]
rs56368064	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56381224	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56386318	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6765538	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6776844	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73141236	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73141241	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73141263	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147264	0.84[ASN][1000 genomes]
rs73147265	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834758	chr3:87867363-88014975	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87995600-88011000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:88000000-88005000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:88003000-88006200	Weak transcription	Primary hematopoietic stem cells	blood

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