Variant report

Variant	nsv965690
Chromosome Location	chr6:26522364-26528458
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:241)
CpG islands
(count:244)
Chromatin interactive
region (count:42)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:241 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:26523331-26523351	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:26523179-26523492	K562	blood:	n/a	n/a
3	ATF1	chr6:26523184-26523442	K562	blood:	n/a	n/a
4	BHLHE40	chr6:26521926-26522531	K562	blood:	n/a	n/a
5	CBX3	chr6:26521223-26522686	K562	blood:	n/a	n/a
6	CCNT2	chr6:26521851-26522457	K562	blood:	n/a	n/a
7	CEBPB	chr6:26523078-26523399	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr6:26523074-26523399	K562	blood:	n/a	n/a
9	CEBPB	chr6:26523150-26523363	HepG2	liver:	n/a	n/a
10	CEBPB	chr6:26523816-26523925	Hela-S3	cervix:	n/a	n/a
11	CEBPB	chr6:26523875-26523877	K562	blood:	n/a	n/a
12	CEBPB	chr6:26523122-26523392	A549	lung:	n/a	n/a
13	CEBPB	chr6:26522789-26523530	K562	blood:	n/a	n/a
14	CEBPB	chr6:26523123-26523374	K562	blood:	n/a	n/a
15	CEBPD	chr6:26523025-26523523	K562	blood:	n/a	n/a
16	CHD1	chr6:26521458-26522538	H1-hESC	embryonic stem cell:	n/a	n/a
17	CHD2	chr6:26521877-26522376	Hela-S3	cervix:	n/a	n/a
18	CHD2	chr6:26523155-26523352	Hela-S3	cervix:	n/a	n/a
19	CHD2	chr6:26523249-26523283	K562	blood:	n/a	n/a
20	CTCF	chr6:26521882-26522380	K562	blood:	n/a	n/a
21	CTCF	chr6:26522400-26522550	AG04449	skin:	n/a	n/a
22	CTCF	chr6:26522340-26522490	GM12868	blood:	n/a	n/a
23	CTCF	chr6:26522280-26522430	GM12871	blood:	n/a	n/a
24	E2F1	chr6:26521802-26522472	Hela-S3	cervix:	n/a	n/a
25	E2F6	chr6:26521881-26522675	K562	blood:	n/a	n/a
26	E2F6	chr6:26522165-26522591	K562	blood:	n/a	n/a
27	E2F6	chr6:26521844-26522671	K562	blood:	n/a	n/a
28	E2F6	chr6:26521766-26522609	A549	lung:	n/a	n/a
29	E2F6	chr6:26521925-26522527	A549	lung:	n/a	n/a
30	EGR1	chr6:26525294-26525522	K562	blood:	n/a	n/a
31	EGR1	chr6:26525294-26525521	K562	blood:	n/a	n/a
32	ELF1	chr6:26521805-26522761	GM12878	blood:	n/a	chr6:26522058-26522070
33	ELF1	chr6:26521855-26522467	K562	blood:	n/a	chr6:26522058-26522070
34	ETS1	chr6:26521825-26522566	K562	blood:	n/a	n/a
35	ETS1	chr6:26522176-26522507	K562	blood:	n/a	n/a
36	FOS	chr6:26523173-26523373	MCF10A-Er-Src	breast:	n/a	n/a
37	FOS	chr6:26523161-26523397	MCF10A-Er-Src	breast:	n/a	n/a
38	FOS	chr6:26523156-26523444	MCF10A-Er-Src	breast:	n/a	n/a
39	FOS	chr6:26523157-26523458	MCF10A-Er-Src	breast:	n/a	n/a
40	FOSL2	chr6:26523125-26523421	HepG2	liver:	n/a	n/a
41	FOXA1	chr6:26523014-26523668	HepG2	liver:	n/a	n/a
42	FOXA1	chr6:26524912-26525471	HepG2	liver:	n/a	n/a
43	FOXA1	chr6:26524964-26525311	HepG2	liver:	n/a	n/a
44	FOXA2	chr6:26521866-26522424	A549	lung:	n/a	n/a
45	FOXM1	chr6:26521830-26522607	GM12878	blood:	n/a	n/a
46	FOXP2	chr6:26521868-26522477	PFSK-1	brain:	n/a	n/a
47	GABPA	chr6:26521815-26522557	K562	blood:	n/a	n/a
48	GATA1	chr6:26521844-26522449	PBDE	blood:	n/a	n/a
49	GATA2	chr6:26524588-26524864	K562	blood:	n/a	n/a
50	GTF2F1	chr6:26522469-26522628	Hela-S3	cervix:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26522578-26522628	GM12878	blood:	n/a
2	chr6:26525404-26525454	NHDF-neo	bronchial:	n/a
3	chr6:26522904-26522954	T-47D	breast:	n/a
4	chr6:26522904-26522954	HMEC	breast:	n/a
5	chr6:26522325-26522375	SK-N-SH_RA	brain:	n/a
6	chr6:26522325-26522375	RPTEC	kidney:	n/a
7	chr6:26522578-26522628	HRCEpiC	kidney:	n/a
8	chr6:26525404-26525454	AG04450	lung:	fetal
9	chr6:26522904-26522954	HepG2	liver:	n/a
10	chr6:26522325-26522375	HAEpiC	amniotic membrane:	n/a
11	chr6:26522904-26522954	AG10803	skin:	n/a
12	chr6:26522578-26522628	PANC-1	pancreas:	n/a
13	chr6:26522325-26522375	HIPEpiC	eye:	n/a
14	chr6:26525404-26525454	MCF-7	breast:	n/a
15	chr6:26525404-26525454	HRE	kidney:	n/a
16	chr6:26522904-26522954	HL-60	blood:	n/a
17	chr6:26522904-26522954	GM12878	blood:	n/a
18	chr6:26522904-26522954	HNPCEpiC	eye:	n/a
19	chr6:26522325-26522375	PrEC	prostate:	n/a
20	chr6:26522325-26522375	AoSMC	blood vessel:	n/a
21	chr6:26522325-26522375	NHDF-neo	bronchial:	n/a
22	chr6:26522904-26522954	AoSMC	blood vessel:	n/a
23	chr6:26522578-26522628	HL-60	blood:	n/a
24	chr6:26522904-26522954	PrEC	prostate:	n/a
25	chr6:26525404-26525454	NHBE	bronchial:	n/a
26	chr6:26522578-26522628	A549	lung:	n/a
27	chr6:26522904-26522954	SK-N-SH_RA	brain:	n/a
28	chr6:26525404-26525454	GM12878	blood:	n/a
29	chr6:26522325-26522375	AG10803	skin:	n/a
30	chr6:26522325-26522375	CMK	blood:	n/a
31	chr6:26522904-26522954	AG09309	skin:	n/a
32	chr6:26522904-26522954	NB4	blood:	n/a
33	chr6:26522325-26522375	ECC-1	luminal epithelium:	n/a
34	chr6:26522904-26522954	Caco-2	colon:	n/a
35	chr6:26522325-26522375	BE2_C	brain:	n/a
36	chr6:26522325-26522375	GM19239	blood:	n/a
37	chr6:26522325-26522375	AG04450	lung:	fetal
38	chr6:26522325-26522375	Hepatocyte	liver:	n/a
39	chr6:26525404-26525454	SK-N-MC	brain:	n/a
40	chr6:26522325-26522375	GM12878	blood:	n/a
41	chr6:26522904-26522954	HCPEpiC	choroid plexus:	n/a
42	chr6:26522578-26522628	U87	brain:	n/a
43	chr6:26525404-26525454	PFSK-1	brain:	n/a
44	chr6:26522325-26522375	SKMC	muscle:	n/a
45	chr6:26522904-26522954	ovcar-3	ovarian:	n/a
46	chr6:26522904-26522954	HUVEC	blood vessel:	n/a
47	chr6:26525404-26525454	ovcar-3	ovarian:	n/a
48	chr6:26522904-26522954	MCF-7	breast:	n/a
49	chr6:26522904-26522954	GM12891	blood:	n/a
50	chr6:26522578-26522628	GM06990	blood:	n/a

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26527779..26530160-chr6:26582450..26584059,2	K562	blood:
2	chr6:26364672..26366648-chr6:26519902..26522691,2	K562	blood:
3	chr1:148241128..148242065-chr6:26522075..26522709,2	Hela-S3	cervix:
4	chr6:26122811..26125684-chr6:26519933..26522732,4	K562	blood:
5	chr6:26283829..26285786-chr6:26519588..26522507,3	K562	blood:
6	chr6:26400255..26403237-chr6:26521906..26524697,3	K562	blood:
7	chr6:26518768..26523261-chr6:26527138..26531427,8	MCF-7	breast:
8	chr6:26383299..26384986-chr6:26520070..26522600,2	K562	blood:
9	chr6:26525132..26526895-chr6:26528404..26530256,2	MCF-7	breast:
10	chr6:26217116..26219858-chr6:26520988..26523268,4	K562	blood:
11	chr6:26420245..26422646-chr6:26519763..26522632,2	K562	blood:
12	chr6:26520627..26522671-chr6:26536742..26539578,4	MCF-7	breast:
13	chr6:26101462..26104336-chr6:26520946..26522887,2	MCF-7	breast:
14	chr6:26380688..26382359-chr6:26523846..26526048,2	K562	blood:
15	chr6:26399787..26402548-chr6:26520304..26522588,2	K562	blood:
16	chr6:26522739..26526214-chr6:26594718..26597971,4	K562	blood:
17	chr6:26520458..26524632-chr6:26536427..26540091,8	MCF-7	breast:
18	chr6:26203687..26207464-chr6:26521178..26524047,5	K562	blood:
19	chr6:26187760..26190799-chr6:26518890..26523308,5	K562	blood:
20	chr6:6857012..6857665-chr6:26522158..26523073,2	Hela-S3	cervix:
21	chr6:26521287..26523540-chr6:26523698..26525415,3	MCF-7	breast:
22	chr6:26457960..26461047-chr6:26519488..26522400,3	MCF-7	breast:
23	chr6:26521728..26524870-chr6:26525559..26528465,3	MCF-7	breast:
24	chr6:26522198..26522805-chr7:86781872..86782576,2	Hela-S3	cervix:
25	chr6:26439181..26441832-chr6:26522312..26525308,2	K562	blood:
26	chr6:26420252..26422779-chr6:26519711..26522673,2	K562	blood:
27	chr6:26519250..26523737-chr6:27099178..27105777,8	K562	blood:
28	chr6:26517743..26520869-chr6:26521157..26524450,4	MCF-7	breast:
29	chr6:26122246..26124996-chr6:26519353..26522732,3	K562	blood:
30	chr16:31191297..31191881-chr6:26521900..26522799,2	Hela-S3	cervix:
31	chr6:26215412..26219085-chr6:26518224..26524021,6	K562	blood:
32	chr6:26195075..26199998-chr6:26518402..26523264,7	K562	blood:
33	chr6:26520764..26524239-chr6:26594606..26597481,4	K562	blood:
34	chr6:26525132..26526895-chr6:26528404..26530256,2	MCF-7	breast:
35	chr6:26521728..26524870-chr6:26525559..26528465,3	MCF-7	breast:
36	chr6:26518768..26523261-chr6:26527138..26531427,8	MCF-7	breast:
37	chr6:26352176..26356420-chr6:26519489..26524545,4	K562	blood:
38	chr6:26360935..26366570-chr6:26520779..26523276,5	K562	blood:
39	chr6:26187831..26190328-chr6:26520761..26523308,3	K562	blood:
40	chr6:26352931..26356420-chr6:26520848..26524138,3	K562	blood:
41	chr6:26234528..26236146-chr6:26520612..26523386,2	K562	blood:
42	chr6:26198124..26199998-chr6:26520705..26522799,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGN4-1	chr6:26527291-26527632	ENSG00000261353.1

No data

Variant related genes	Relation type
ENSG00000261353	TF binding region
RNU6-502P	TF binding region
ENSG00000261353	CpG island
RNU6-502P	CpG island
ENSG00000124635	chromatin interactions
ENSG00000168274	chromatin interactions
ENSG00000198518	chromatin interactions
ENSG00000111801	chromatin interactions
ENSG00000124508	chromatin interactions
ENSG00000197409	chromatin interactions
ENSG00000197846	chromatin interactions
ENSG00000207501	chromatin interactions
ENSG00000182952	chromatin interactions
ENSG00000089280	chromatin interactions
ENSG00000196787	chromatin interactions
ENSG00000216331	chromatin interactions
ENSG00000026950	chromatin interactions
ENSG00000186470	chromatin interactions
ENSG00000188987	chromatin interactions
ENSG00000180596	chromatin interactions
ENSG00000112763	chromatin interactions
ENSG00000252399	chromatin interactions
ENSG00000228223	chromatin interactions
ENSG00000146109	chromatin interactions
ENSG00000261353	chromatin interactions
ENSG00000124575	chromatin interactions
ENSG00000135164	chromatin interactions
ENSG00000124549	chromatin interactions
ENSG00000187990	chromatin interactions
ENSG00000197061	chromatin interactions
ENSG00000199289	chromatin interactions
ENSG00000196866	chromatin interactions
ENSG00000158406	chromatin interactions
ENSG00000215979	chromatin interactions
ENSG00000180573	chromatin interactions

Extended variants
information (count: 196 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:196 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555046751	chr6:26522366-26522367	Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	31 gene(s)	Overlapped CNVs	n/a
2	rs555691381	chr6:26522408-26522409	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	30 gene(s)	Overlapped CNVs	n/a
3	rs182088562	chr6:26522435-26522436	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	30 gene(s)	Overlapped CNVs	n/a
4	rs141836728	chr6:26522451-26522452	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	30 gene(s)	Overlapped CNVs	n/a
5	rs568740044	chr6:26522458-26522459	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	30 gene(s)	Overlapped CNVs	n/a
6	rs540654982	chr6:26522532-26522533	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
7	rs564138219	chr6:26522556-26522557	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
8	rs116080308	chr6:26522572-26522573	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
9	rs200165666	chr6:26522600-26522601	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	29 gene(s)	Overlapped CNVs	n/a
10	rs114301856	chr6:26522611-26522612	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	Overlapped CNVs	n/a
11	rs563834736	chr6:26522638-26522639	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	28 gene(s)	Overlapped CNVs	n/a
12	rs4343916	chr6:26522675-26522676	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	27 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs549647778	chr6:26522707-26522708	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	27 gene(s)	Overlapped CNVs	n/a
14	rs369837068	chr6:26522752-26522753	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
15	rs539463652	chr6:26522780-26522781	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	24 gene(s)	Overlapped CNVs	n/a
16	rs115643361	chr6:26522802-26522803	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	23 gene(s)	Overlapped CNVs	n/a
17	rs528618780	chr6:26522812-26522813	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
18	rs551462110	chr6:26522830-26522831	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
19	rs571634333	chr6:26522860-26522861	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
20	rs539317818	chr6:26522872-26522873	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
21	rs556431217	chr6:26522873-26522874	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	22 gene(s)	Overlapped CNVs	n/a
22	rs569464976	chr6:26522927-26522928	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
23	rs147221808	chr6:26522968-26522969	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
24	rs555182073	chr6:26523003-26523004	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
25	rs566262176	chr6:26523050-26523051	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
26	rs571788306	chr6:26523177-26523178	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
27	rs541143821	chr6:26523216-26523217	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
28	rs557435506	chr6:26523246-26523247	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
29	rs577576153	chr6:26523248-26523249	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
30	rs372792269	chr6:26523261-26523262	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	21 gene(s)	Overlapped CNVs	n/a
31	rs563970443	chr6:26523291-26523292	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
32	rs529656293	chr6:26523295-26523296	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
33	rs543230551	chr6:26523352-26523353	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
34	rs76245152	chr6:26523362-26523363	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
35	rs140580139	chr6:26523397-26523398	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
36	rs528547999	chr6:26523504-26523505	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
37	rs551865283	chr6:26523514-26523515	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
38	rs565092020	chr6:26523533-26523534	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
39	rs530936574	chr6:26523572-26523573	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
40	rs550606270	chr6:26523617-26523618	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
41	rs144425402	chr6:26523696-26523697	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
42	rs535389548	chr6:26523725-26523726	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
43	rs147413247	chr6:26523728-26523729	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
44	rs11962165	chr6:26523759-26523760	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	11 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs534381064	chr6:26523774-26523775	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
46	rs557839945	chr6:26523852-26523853	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
47	rs577713897	chr6:26523912-26523913	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
48	rs369393302	chr6:26523999-26524000	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
49	rs537043477	chr6:26524060-26524061	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
50	rs6910930	chr6:26524061-26524062	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:101)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	21569311	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:375 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26520400-26522400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:26520400-26522800	Active TSS	Brain Angular Gyrus	brain
3	chr6:26520400-26522800	Active TSS	Fetal Lung	lung
4	chr6:26520400-26522800	Active TSS	HSMMtube	muscle
5	chr6:26520400-26523000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:26520400-26523000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr6:26520400-26523200	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr6:26520600-26522400	Active TSS	Pancreas	Pancrea
9	chr6:26520600-26522400	Active TSS	Placenta Amnion	Placenta Amnion
10	chr6:26520600-26522600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr6:26520600-26522800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:26520600-26522800	Active TSS	Colonic Mucosa	Colon
13	chr6:26520600-26522800	Active TSS	Fetal Brain Female	brain
14	chr6:26520600-26522800	Active TSS	Ovary	ovary
15	chr6:26520600-26522800	Active TSS	Sigmoid Colon	Sigmoid Colon
16	chr6:26520600-26523000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:26520600-26523000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:26520600-26523000	Active TSS	Psoas Muscle	Psoas
19	chr6:26520600-26523200	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:26520600-26523200	Active TSS	Fetal Stomach	stomach
21	chr6:26520600-26523400	Active TSS	H9 Cell Line	embryonic stem cell
22	chr6:26520600-26523400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:26520600-26523400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:26520600-26523400	Active TSS	Brain Substantia Nigra	brain
25	chr6:26520600-26523600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:26520600-26523800	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:26520600-26523800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:26520600-26524400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:26520800-26522400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:26520800-26522400	Active TSS	Duodenum Mucosa	Duodenum
31	chr6:26520800-26522400	Active TSS	Esophagus	oesophagus
32	chr6:26520800-26522600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr6:26520800-26522600	Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr6:26520800-26522600	Active TSS	Aorta	Aorta
35	chr6:26520800-26522600	Active TSS	NHLF	lung
36	chr6:26520800-26522800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:26520800-26522800	Active TSS	Brain Hippocampus Middle	brain
38	chr6:26520800-26522800	ZNF genes & repeats	Fetal Brain Male	brain
39	chr6:26520800-26522800	Active TSS	Lung	lung
40	chr6:26520800-26522800	Active TSS	Rectal Smooth Muscle	rectum
41	chr6:26520800-26522800	Active TSS	Right Ventricle	heart
42	chr6:26520800-26523000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:26520800-26523000	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr6:26520800-26523000	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr6:26520800-26523000	Active TSS	Brain Anterior Caudate	brain
46	chr6:26520800-26523000	Active TSS	Brain Cingulate Gyrus	brain
47	chr6:26520800-26523000	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr6:26520800-26523000	Active TSS	Fetal Intestine Large	intestine
49	chr6:26520800-26523200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:26520800-26523200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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