Variant report

Variant	rs535389548
Chromosome Location	chr6:26523725-26523726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:26523626-26523743	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26521287..26523540-chr6:26523698..26525415,3	MCF-7	breast:
2	chr6:26522739..26526214-chr6:26594718..26597971,4	K562	blood:
3	chr6:26520764..26524239-chr6:26594606..26597481,4	K562	blood:
4	chr6:26517743..26520869-chr6:26521157..26524450,4	MCF-7	breast:
5	chr6:26352176..26356420-chr6:26519489..26524545,4	K562	blood:
6	chr6:26520458..26524632-chr6:26536427..26540091,8	MCF-7	breast:
7	chr6:26352931..26356420-chr6:26520848..26524138,3	K562	blood:
8	chr6:26519250..26523737-chr6:27099178..27105777,8	K562	blood:
9	chr6:26203687..26207464-chr6:26521178..26524047,5	K562	blood:
10	chr6:26215412..26219085-chr6:26518224..26524021,6	K562	blood:
11	chr6:26400255..26403237-chr6:26521906..26524697,3	K562	blood:
12	chr6:26521728..26524870-chr6:26525559..26528465,3	MCF-7	breast:
13	chr6:26439181..26441832-chr6:26522312..26525308,2	K562	blood:

No data

Variant related genes	Relation type
RNU6-502P	TF binding region
ENSG00000261353	TF binding region
ENSG00000026950	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000111801	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000261353	Chromatin interaction
ENSG00000252399	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000182952	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv965690	chr6:26522364-26528458	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26520600-26523800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:26520600-26523800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:26520600-26524400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:26521000-26524000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:26521000-26524000	Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr6:26521000-26524400	Active TSS	GM12878-XiMat	blood
7	chr6:26522200-26523800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr6:26522600-26524400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:26522600-26525000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:26522600-26533200	Weak transcription	NHLF	lung
11	chr6:26522800-26524000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:26522800-26524000	Active TSS	K562	blood
13	chr6:26522800-26524200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:26522800-26524200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:26522800-26524400	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:26522800-26526600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:26522800-26530200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:26522800-26533200	Weak transcription	Ovary	ovary
19	chr6:26523000-26523800	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:26523000-26523800	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:26523000-26523800	Enhancers	Brain Angular Gyrus	brain
22	chr6:26523000-26524400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:26523000-26524400	Enhancers	NHEK	skin
24	chr6:26523000-26525800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:26523200-26524000	Enhancers	Adipose Nuclei	Adipose
26	chr6:26523200-26524200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:26523200-26525000	Weak transcription	Fetal Intestine Large	intestine
28	chr6:26523200-26525400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:26523400-26523800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:26523400-26523800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:26523400-26523800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr6:26523400-26523800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:26523400-26523800	Weak transcription	Liver	Liver
34	chr6:26523400-26523800	Enhancers	Colon Smooth Muscle	Colon
35	chr6:26523400-26524200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:26523400-26524200	Enhancers	Duodenum Mucosa	Duodenum
37	chr6:26523400-26524200	Weak transcription	Fetal Intestine Small	intestine
38	chr6:26523400-26524200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:26523400-26524200	Enhancers	HMEC	breast
40	chr6:26523400-26524400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr6:26523400-26524400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:26523400-26524400	Enhancers	Fetal Lung	lung
43	chr6:26523400-26525400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:26523400-26526000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:26523400-26526000	Weak transcription	HSMMtube	muscle
46	chr6:26523400-26526200	Weak transcription	Right Ventricle	heart
47	chr6:26523400-26527800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:26523400-26527800	Weak transcription	Psoas Muscle	Psoas
49	chr6:26523400-26528000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:26523400-26528400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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