Variant report

Variant	nsv965720
Chromosome Location	chr6:35820342-35822207
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35818609..35820359-chr6:35887336..35888939,2	MCF-7	breast:
2	chr6:35818429..35821415-chr6:35822584..35824635,3	K562	blood:
3	chr6:35820072..35822783-chr6:35858077..35859581,2	K562	blood:

Variant related genes	Relation type
ENSG00000096063	chromatin interactions

Extended variants
information (count: 64 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs145428431	chr6:35820421-35820422	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs149213983	chr6:35820432-35820433	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs2395637	chr6:35820544-35820545	Strong transcription Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs189983101	chr6:35820563-35820564	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs372802627	chr6:35820589-35820590	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs550093191	chr6:35820593-35820594	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs181581013	chr6:35820677-35820678	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs574757468	chr6:35820678-35820679	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs540294659	chr6:35820787-35820788	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs564442921	chr6:35820796-35820797	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs201711152	chr6:35820815-35820816	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs721694	chr6:35820848-35820849	Strong transcription Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs565459320	chr6:35820855-35820856	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs536310494	chr6:35820861-35820862	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs540688155	chr6:35820921-35820922	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs115306057	chr6:35820927-35820928	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs185688471	chr6:35820928-35820929	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs369464528	chr6:35820952-35820953	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs529511127	chr6:35820990-35820991	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs539531298	chr6:35821009-35821010	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs556858552	chr6:35821016-35821017	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs374021155	chr6:35821030-35821031	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs145123032	chr6:35821040-35821041	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs560484106	chr6:35821068-35821069	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs146853778	chr6:35821077-35821078	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs374197466	chr6:35821082-35821083	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs543132759	chr6:35821110-35821111	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs561220544	chr6:35821191-35821192	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs373581840	chr6:35821203-35821204	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs74714912	chr6:35821272-35821273	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs549663923	chr6:35821287-35821288	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs549548289	chr6:35821288-35821289	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs563076305	chr6:35821309-35821310	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs146262626	chr6:35821314-35821315	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs9462136	chr6:35821357-35821358	Strong transcription Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs539588374	chr6:35821365-35821366	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs532241012	chr6:35821441-35821442	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs547011143	chr6:35821443-35821444	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs565364380	chr6:35821453-35821454	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs144680562	chr6:35821491-35821492	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs9470139	chr6:35821514-35821515	Strong transcription Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs569646841	chr6:35821524-35821525	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs538435354	chr6:35821566-35821567	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs570081704	chr6:35821582-35821583	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs375178771	chr6:35821628-35821629	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs539156780	chr6:35821636-35821637	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs140386198	chr6:35821665-35821666	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs552510191	chr6:35821666-35821667	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs556752709	chr6:35821720-35821721	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs578253327	chr6:35821735-35821736	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Lung cancer	19153074	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:167 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35791400-35824200	Weak transcription	Fetal Brain Male	brain
3	chr6:35798200-35823800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:35799600-35837200	Weak transcription	Fetal Kidney	kidney
5	chr6:35799800-35823000	Weak transcription	Colonic Mucosa	Colon
6	chr6:35800000-35823800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:35801000-35832600	Strong transcription	Fetal Thymus	thymus
9	chr6:35801000-35840600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:35801200-35824000	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:35801200-35826400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:35801200-35837200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:35801200-35849000	Strong transcription	Dnd41	blood
14	chr6:35801400-35832400	Strong transcription	HepG2	liver
15	chr6:35801800-35827800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:35801800-35828800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:35802000-35824000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:35803000-35823600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:35803200-35823600	Weak transcription	Esophagus	oesophagus
20	chr6:35803200-35828800	Weak transcription	Pancreas	Pancrea
21	chr6:35803400-35823800	Weak transcription	Aorta	Aorta
22	chr6:35803400-35823800	Weak transcription	Small Intestine	intestine
23	chr6:35803800-35823400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:35804000-35823800	Weak transcription	Gastric	stomach
25	chr6:35804400-35849000	Strong transcription	K562	blood
26	chr6:35804600-35823200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:35805400-35823800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:35806200-35824000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:35806400-35822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:35806600-35824800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:35806800-35844800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
33	chr6:35807200-35820400	Weak transcription	Brain Germinal Matrix	brain
34	chr6:35807800-35822800	Weak transcription	Lung	lung
35	chr6:35808000-35823800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:35808600-35822800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:35808600-35824000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:35810400-35823400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:35810600-35820600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:35812200-35825000	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:35812200-35825200	Strong transcription	Fetal Intestine Large	intestine
42	chr6:35812200-35825400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
44	chr6:35812800-35825200	Strong transcription	HMEC	breast
45	chr6:35813400-35822000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:35813400-35833000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:35815000-35825600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:35815200-35829400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:35815600-35824800	Strong transcription	A549	lung
50	chr6:35815600-35831200	Strong transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links