Variant report

Variant	rs375178771
Chromosome Location	chr6:35821628-35821629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35820072..35822783-chr6:35858077..35859581,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv965720	chr6:35820342-35822207	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35791400-35824200	Weak transcription	Fetal Brain Male	brain
3	chr6:35798200-35823800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:35799600-35837200	Weak transcription	Fetal Kidney	kidney
5	chr6:35799800-35823000	Weak transcription	Colonic Mucosa	Colon
6	chr6:35800000-35823800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:35801000-35832600	Strong transcription	Fetal Thymus	thymus
9	chr6:35801000-35840600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:35801200-35824000	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:35801200-35826400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:35801200-35837200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:35801200-35849000	Strong transcription	Dnd41	blood
14	chr6:35801400-35832400	Strong transcription	HepG2	liver
15	chr6:35801800-35827800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:35801800-35828800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:35802000-35824000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:35803000-35823600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:35803200-35823600	Weak transcription	Esophagus	oesophagus
20	chr6:35803200-35828800	Weak transcription	Pancreas	Pancrea
21	chr6:35803400-35823800	Weak transcription	Aorta	Aorta
22	chr6:35803400-35823800	Weak transcription	Small Intestine	intestine
23	chr6:35803800-35823400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:35804000-35823800	Weak transcription	Gastric	stomach
25	chr6:35804400-35849000	Strong transcription	K562	blood
26	chr6:35804600-35823200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:35805400-35823800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:35806200-35824000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:35806400-35822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:35806600-35824800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:35806800-35844800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
33	chr6:35807800-35822800	Weak transcription	Lung	lung
34	chr6:35808000-35823800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:35808600-35822800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:35808600-35824000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:35810400-35823400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:35812200-35825000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:35812200-35825200	Strong transcription	Fetal Intestine Large	intestine
40	chr6:35812200-35825400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
42	chr6:35812800-35825200	Strong transcription	HMEC	breast
43	chr6:35813400-35822000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:35813400-35833000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:35815000-35825600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:35815200-35829400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:35815600-35824800	Strong transcription	A549	lung
48	chr6:35815600-35831200	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr6:35815800-35840600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr6:35816000-35825600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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