Variant report
Variant | nsv966209 |
---|---|
Chromosome Location | chr4:110294753-110295739 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs76903376 | chr4:110294803-110294804 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs75979370 | chr4:110294833-110294834 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs569458199 | chr4:110294865-110294866 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs17040380 | chr4:110294870-110294871 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs554586965 | chr4:110294922-110294923 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs574480273 | chr4:110294935-110294936 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs539954114 | chr4:110294968-110294969 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs554979015 | chr4:110294978-110294979 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs140595090 | chr4:110295000-110295001 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs10006960 | chr4:110295045-110295046 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs576492858 | chr4:110295113-110295114 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs577222867 | chr4:110295193-110295194 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs545690245 | chr4:110295203-110295204 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs186871587 | chr4:110295220-110295221 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs191764212 | chr4:110295230-110295231 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs576305780 | chr4:110295259-110295260 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs542123809 | chr4:110295316-110295317 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs558756119 | chr4:110295362-110295363 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs183943497 | chr4:110295427-110295428 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs527297969 | chr4:110295465-110295466 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs547388084 | chr4:110295497-110295498 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs576973229 | chr4:110295534-110295535 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs78506186 | chr4:110295549-110295550 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs552535456 | chr4:110295622-110295623 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs115339144 | chr4:110295633-110295634 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs188943682 | chr4:110295656-110295657 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs538874125 | chr4:110295658-110295659 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs6826810 | chr4:110295707-110295708 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
29 | rs533937532 | chr4:110295708-110295709 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs554096706 | chr4:110295710-110295711 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs369956090 | chr4:110295730-110295731 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21858162 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Breast cancer | 17603634 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Myxofibrosarcoma | 16751306 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Breast cancer | 16272173 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
4q-syndrome | 17576883 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Muscular dystrophy | 21149563 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cervical cancer | 21062161 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Breast cancer | 16608533 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Lung cancer | 19208797 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 21785460 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Lung cancer | 18438408 | CNVD |
Cancer | 22429812 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Cancer | 21183584 | CNVD |
primary effusion lymphomas | 17116491 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 17133270 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Colorectal cancer | 20459617 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Congenital anomalies of the kidney and urinary tract | 20505237 | CNVD |
Breast cancer | 17393978 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Melanoma | 20688739 | CNVD |
Breast cancer | 16397240 | CNVD |
Schizophrenia | 19546859 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:110292800-110297000 | Weak transcription | Placenta | Placenta |
2 | chr4:110294000-110296800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |