Variant report
| Variant | rs6826810 |
|---|---|
| Chromosome Location | chr4:110295707-110295708 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11932667 | 1.00[ASN][1000 genomes] |
| rs11946917 | 1.00[ASN][1000 genomes] |
| rs11946981 | 1.00[ASN][1000 genomes] |
| rs13110999 | 0.85[CEU][hapmap] |
| rs13122093 | 0.85[CEU][hapmap] |
| rs13128445 | 1.00[CEU][hapmap] |
| rs13140373 | 0.85[CEU][hapmap] |
| rs13141018 | 0.86[EUR][1000 genomes] |
| rs13147221 | 0.86[EUR][1000 genomes] |
| rs13147935 | 0.91[EUR][1000 genomes] |
| rs17040364 | 1.00[ASN][1000 genomes] |
| rs17040369 | 1.00[ASN][1000 genomes] |
| rs17040375 | 1.00[ASN][1000 genomes] |
| rs17040384 | 1.00[ASN][1000 genomes] |
| rs17040386 | 1.00[ASN][1000 genomes] |
| rs17040387 | 1.00[ASN][1000 genomes] |
| rs17040388 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17040390 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28528383 | 0.90[ASN][1000 genomes] |
| rs28642881 | 1.00[ASN][1000 genomes] |
| rs34011966 | 0.92[EUR][1000 genomes] |
| rs34286241 | 0.86[EUR][1000 genomes] |
| rs34839743 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35525444 | 0.87[EUR][1000 genomes] |
| rs66650623 | 0.87[EUR][1000 genomes] |
| rs6854151 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs714586 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7681671 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7691652 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461613 | chr4:109922064-110593460 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv595129 | chr4:109922064-110593460 | Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv966209 | chr4:110294753-110295739 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:110292800-110297000 | Weak transcription | Placenta | Placenta |
| 2 | chr4:110294000-110296800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
