Variant report

Variant	rs11946917
Chromosome Location	chr4:110294455-110294456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11932581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11932667	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11933064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940005	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941754	1.00[EUR][1000 genomes]
rs11945014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11945496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11946981	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040297	1.00[EUR][1000 genomes]
rs17040364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040386	1.00[ASN][1000 genomes]
rs17040387	1.00[ASN][1000 genomes]
rs28528383	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28642881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727311	1.00[EUR][1000 genomes]
rs55762783	1.00[EUR][1000 genomes]
rs61006726	1.00[EUR][1000 genomes]
rs61459557	1.00[EUR][1000 genomes]
rs61488031	1.00[EUR][1000 genomes]
rs6826810	1.00[ASN][1000 genomes]
rs72892728	1.00[EUR][1000 genomes]
rs72892735	1.00[EUR][1000 genomes]
rs72892737	1.00[EUR][1000 genomes]
rs73838561	1.00[EUR][1000 genomes]
rs73838812	1.00[EUR][1000 genomes]
rs73838813	1.00[EUR][1000 genomes]
rs73838815	1.00[EUR][1000 genomes]
rs73838816	1.00[EUR][1000 genomes]
rs73838817	1.00[EUR][1000 genomes]
rs73838818	1.00[EUR][1000 genomes]
rs7678204	1.00[EUR][1000 genomes]
rs7691652	1.00[ASN][1000 genomes]
rs7695097	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110291000-110294600	Weak transcription	HSMMtube	muscle
2	chr4:110292800-110297000	Weak transcription	Placenta	Placenta
3	chr4:110294000-110296800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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