Variant report

Variant	rs73838816
Chromosome Location	chr4:110494959-110494960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110480002..110482808-chr4:110493140..110496581,4	MCF-7	breast:
2	chr4:110353379..110355385-chr4:110493462..110495883,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000005059	Chromatin interaction
ENSG00000138802	Chromatin interaction
ENSG00000247950	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11932581	1.00[EUR][1000 genomes]
rs11932667	1.00[EUR][1000 genomes]
rs11932771	1.00[EUR][1000 genomes]
rs11933064	1.00[EUR][1000 genomes]
rs11940005	1.00[EUR][1000 genomes]
rs11941754	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11945014	1.00[EUR][1000 genomes]
rs11945496	1.00[EUR][1000 genomes]
rs11946917	1.00[EUR][1000 genomes]
rs11946981	1.00[EUR][1000 genomes]
rs17040364	1.00[EUR][1000 genomes]
rs17040369	1.00[EUR][1000 genomes]
rs17040375	1.00[EUR][1000 genomes]
rs17040384	1.00[EUR][1000 genomes]
rs28528383	1.00[EUR][1000 genomes]
rs28642881	1.00[EUR][1000 genomes]
rs55762783	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61006726	1.00[EUR][1000 genomes]
rs61459557	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61488031	1.00[EUR][1000 genomes]
rs73838812	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838813	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838815	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838817	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838818	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7678204	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110482800-110495400	Weak transcription	Stomach Mucosa	stomach
2	chr4:110483000-110498200	Weak transcription	HMEC	breast
3	chr4:110484000-110496000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:110484200-110495800	Weak transcription	Fetal Thymus	thymus
5	chr4:110484200-110509400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:110484400-110495400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:110484400-110495800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:110484400-110497200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:110484400-110509400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:110484400-110509400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:110484400-110509400	Weak transcription	Thymus	Thymus
12	chr4:110484800-110495600	Weak transcription	Dnd41	blood
13	chr4:110485000-110495400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:110486800-110495200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:110490000-110502600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr4:110490600-110495800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr4:110491200-110495800	Weak transcription	GM12878-XiMat	blood
18	chr4:110491600-110495200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:110491800-110495400	Weak transcription	HUVEC	blood vessel
20	chr4:110492000-110495000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:110493000-110495400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:110493200-110495400	Weak transcription	Brain Germinal Matrix	brain
23	chr4:110493200-110497600	Weak transcription	Primary B cells from cord blood	blood
24	chr4:110493400-110495400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr4:110493400-110495400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:110493800-110496000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr4:110494200-110496600	Enhancers	Primary T cells fromperipheralblood	blood
28	chr4:110494400-110496000	Enhancers	Esophagus	oesophagus
29	chr4:110494600-110495800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr4:110494600-110496400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr4:110494600-110498000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr4:110494800-110495000	Genic enhancers	Primary T cells from cord blood	blood
33	chr4:110494800-110495800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr4:110494800-110499600	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links