Variant report

Variant	rs61488031
Chromosome Location	chr4:110497403-110497404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11932581	1.00[EUR][1000 genomes]
rs11932667	1.00[EUR][1000 genomes]
rs11932771	1.00[EUR][1000 genomes]
rs11933064	1.00[EUR][1000 genomes]
rs11940005	1.00[EUR][1000 genomes]
rs11941754	1.00[EUR][1000 genomes]
rs11945014	1.00[EUR][1000 genomes]
rs11945496	1.00[EUR][1000 genomes]
rs11946917	1.00[EUR][1000 genomes]
rs11946981	1.00[EUR][1000 genomes]
rs17040364	1.00[EUR][1000 genomes]
rs17040369	1.00[EUR][1000 genomes]
rs17040375	1.00[EUR][1000 genomes]
rs17040384	1.00[EUR][1000 genomes]
rs28528383	1.00[EUR][1000 genomes]
rs28642881	1.00[EUR][1000 genomes]
rs4986786	1.00[AMR][1000 genomes]
rs55762783	1.00[EUR][1000 genomes]
rs61006726	1.00[EUR][1000 genomes]
rs61459557	1.00[EUR][1000 genomes]
rs73838812	1.00[EUR][1000 genomes]
rs73838813	1.00[EUR][1000 genomes]
rs73838815	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838816	1.00[EUR][1000 genomes]
rs73838817	1.00[EUR][1000 genomes]
rs73838818	1.00[EUR][1000 genomes]
rs7678204	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110483000-110498200	Weak transcription	HMEC	breast
2	chr4:110484200-110509400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:110484400-110509400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:110484400-110509400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:110484400-110509400	Weak transcription	Thymus	Thymus
6	chr4:110490000-110502600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:110493200-110497600	Weak transcription	Primary B cells from cord blood	blood
8	chr4:110494600-110498000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:110494800-110499600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:110495000-110498200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:110495400-110498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:110495800-110498000	Enhancers	K562	blood
13	chr4:110496000-110497600	Enhancers	Primary hematopoietic stem cells	blood
14	chr4:110496200-110498400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:110496200-110500600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr4:110496400-110498400	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr4:110496400-110499600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr4:110496400-110500000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:110496400-110500400	Weak transcription	Fetal Thymus	thymus
20	chr4:110496400-110509000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:110496400-110510200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:110496600-110499600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr4:110496600-110503800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr4:110496800-110498400	Enhancers	Placenta	Placenta
25	chr4:110497200-110497600	Flanking Active TSS	HUVEC	blood vessel
26	chr4:110497200-110497800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr4:110497200-110498000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr4:110497200-110498000	Genic enhancers	Primary T cells from cord blood	blood
29	chr4:110497200-110498000	Enhancers	Fetal Brain Female	brain
30	chr4:110497200-110499600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:110497200-110500000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr4:110497400-110497600	Weak transcription	Small Intestine	intestine
33	chr4:110497400-110498200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr4:110497400-110499800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr4:110497400-110504000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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