Variant report

Variant	rs11932581
Chromosome Location	chr4:110413083-110413084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110411951..110414607-chr4:110416539..110418397,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11932667	1.00[EUR][1000 genomes]
rs11932771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11933064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941754	1.00[EUR][1000 genomes]
rs11945014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11945496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11946917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11946981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040297	1.00[EUR][1000 genomes]
rs17040364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040369	1.00[EUR][1000 genomes]
rs17040375	1.00[EUR][1000 genomes]
rs17040384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28528383	1.00[EUR][1000 genomes]
rs28642881	1.00[EUR][1000 genomes]
rs34727311	1.00[EUR][1000 genomes]
rs5030676	1.00[AMR][1000 genomes]
rs55762783	1.00[EUR][1000 genomes]
rs61006726	1.00[EUR][1000 genomes]
rs61459557	1.00[EUR][1000 genomes]
rs61488031	1.00[EUR][1000 genomes]
rs72892735	1.00[EUR][1000 genomes]
rs72892737	1.00[EUR][1000 genomes]
rs73838561	1.00[EUR][1000 genomes]
rs73838812	1.00[EUR][1000 genomes]
rs73838813	1.00[EUR][1000 genomes]
rs73838815	1.00[EUR][1000 genomes]
rs73838816	1.00[EUR][1000 genomes]
rs73838817	1.00[EUR][1000 genomes]
rs73838818	1.00[EUR][1000 genomes]
rs7678204	1.00[EUR][1000 genomes]
rs7695097	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv525385	chr4:110395146-110466413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110378800-110415800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:110385600-110415800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:110385600-110415800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:110385600-110415800	Weak transcription	Esophagus	oesophagus
5	chr4:110385800-110415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:110385800-110415800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:110385800-110415800	Weak transcription	Colonic Mucosa	Colon
8	chr4:110386000-110415800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:110386200-110415800	Weak transcription	Lung	lung
10	chr4:110386200-110415800	Weak transcription	Spleen	Spleen
11	chr4:110386400-110413600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:110386400-110415600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:110386400-110415800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:110386600-110415600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:110386800-110415600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:110387000-110415600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:110387000-110415800	Weak transcription	Fetal Brain Male	brain
18	chr4:110387000-110415800	Weak transcription	Fetal Brain Female	brain
19	chr4:110387000-110416400	Weak transcription	Right Ventricle	heart
20	chr4:110387200-110415600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:110387600-110415600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:110390000-110415400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:110391800-110415400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:110391800-110415600	Weak transcription	Ovary	ovary
25	chr4:110393000-110415600	Weak transcription	Fetal Stomach	stomach
26	chr4:110393000-110415600	Weak transcription	Thymus	Thymus
27	chr4:110393000-110415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:110393000-110415800	Weak transcription	Gastric	stomach
29	chr4:110393000-110415800	Weak transcription	Left Ventricle	heart
30	chr4:110393000-110415800	Weak transcription	Pancreas	Pancrea
31	chr4:110393000-110417400	Weak transcription	Psoas Muscle	Psoas
32	chr4:110393200-110415600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:110393200-110415800	Weak transcription	Small Intestine	intestine
34	chr4:110393200-110422600	Weak transcription	Right Atrium	heart
35	chr4:110393600-110415600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr4:110393800-110413400	Weak transcription	Fetal Heart	heart
37	chr4:110393800-110415400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr4:110393800-110415600	Weak transcription	NHLF	lung
39	chr4:110393800-110415800	Weak transcription	Aorta	Aorta
40	chr4:110393800-110415800	Weak transcription	HSMMtube	muscle
41	chr4:110393800-110469200	Weak transcription	Stomach Mucosa	stomach
42	chr4:110394400-110415800	Weak transcription	Brain Anterior Caudate	brain
43	chr4:110395200-110415800	Weak transcription	A549	lung
44	chr4:110395600-110415800	Weak transcription	Hela-S3	cervix
45	chr4:110396200-110415800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:110396600-110415000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:110398800-110413800	Weak transcription	Fetal Intestine Small	intestine
48	chr4:110400200-110415800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr4:110400200-110455400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr4:110400600-110415800	Weak transcription	Colon Smooth Muscle	Colon

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