Variant report

Variant	rs11941754
Chromosome Location	chr4:110482861-110482862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11930142	0.82[YRI][hapmap]
rs11932581	1.00[EUR][1000 genomes]
rs11932667	1.00[EUR][1000 genomes]
rs11932771	1.00[EUR][1000 genomes]
rs11933064	1.00[EUR][1000 genomes]
rs11940005	1.00[EUR][1000 genomes]
rs11940194	1.00[EUR][1000 genomes]
rs11945014	1.00[EUR][1000 genomes]
rs11945496	1.00[EUR][1000 genomes]
rs11946917	1.00[EUR][1000 genomes]
rs11946981	1.00[EUR][1000 genomes]
rs17040364	1.00[EUR][1000 genomes]
rs17040369	1.00[EUR][1000 genomes]
rs17040375	1.00[EUR][1000 genomes]
rs17040384	1.00[EUR][1000 genomes]
rs28528383	1.00[EUR][1000 genomes]
rs28642881	1.00[EUR][1000 genomes]
rs55762783	1.00[EUR][1000 genomes]
rs61006726	1.00[EUR][1000 genomes]
rs61459557	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61488031	1.00[EUR][1000 genomes]
rs73838812	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838813	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838815	1.00[EUR][1000 genomes]
rs73838816	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838817	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73838818	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7678204	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110480400-110483200	Active TSS	NHDF-Ad	bronchial
2	chr4:110480600-110483000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:110480600-110483000	Active TSS	Primary T helper naive cells from peripheral blood	blood
4	chr4:110480600-110483000	Active TSS	Thymus	Thymus
5	chr4:110480600-110483000	Active TSS	Hela-S3	cervix
6	chr4:110480600-110483200	Active TSS	NHLF	lung
7	chr4:110480800-110483000	Active TSS	HSMMtube	muscle
8	chr4:110481600-110483400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr4:110481800-110483000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:110482000-110483000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:110482000-110483000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr4:110482200-110483000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:110482200-110484800	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr4:110482200-110485200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr4:110482400-110483000	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr4:110482400-110483000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr4:110482400-110483000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:110482400-110483000	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr4:110482400-110483000	Weak transcription	Spleen	Spleen
20	chr4:110482400-110483000	Flanking Active TSS	Osteobl	bone
21	chr4:110482400-110483200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:110482400-110483400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:110482400-110483400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr4:110482400-110483600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:110482400-110483800	Flanking Active TSS	Dnd41	blood
26	chr4:110482400-110484200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:110482400-110485200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:110482600-110483000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:110482600-110483000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:110482600-110483000	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr4:110482600-110483000	Active TSS	Fetal Brain Female	brain
32	chr4:110482600-110483000	Active TSS	Placenta	Placenta
33	chr4:110482600-110483000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
34	chr4:110482600-110483000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr4:110482600-110483000	Active TSS	NH-A	brain
36	chr4:110482600-110483200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr4:110482600-110483400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:110482600-110483400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:110482600-110483400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr4:110482600-110483400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr4:110482600-110483800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr4:110482600-110483800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr4:110482600-110484200	Flanking Active TSS	GM12878-XiMat	blood
44	chr4:110482600-110484600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr4:110482800-110483000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr4:110482800-110483000	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr4:110482800-110483000	Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr4:110482800-110483000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:110482800-110483000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:110482800-110483000	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links