Variant report

Variant	rs7691652
Chromosome Location	chr4:110293812-110293813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10002595	1.00[MEX][hapmap]
rs10016533	1.00[MEX][hapmap]
rs11932667	1.00[ASN][1000 genomes]
rs11933172	0.84[GIH][hapmap]
rs11946917	1.00[ASN][1000 genomes]
rs11946981	1.00[ASN][1000 genomes]
rs13110999	0.85[CEU][hapmap]
rs13122093	0.85[CEU][hapmap]
rs13123618	1.00[MEX][hapmap]
rs13128445	1.00[CEU][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap]
rs13140373	0.85[CEU][hapmap]
rs13141018	0.86[EUR][1000 genomes]
rs13142698	1.00[MEX][hapmap]
rs13147221	0.86[EUR][1000 genomes]
rs13147935	0.91[EUR][1000 genomes]
rs17040364	1.00[ASN][1000 genomes]
rs17040369	1.00[ASN][1000 genomes]
rs17040375	1.00[ASN][1000 genomes]
rs17040384	1.00[ASN][1000 genomes]
rs17040386	1.00[ASN][1000 genomes]
rs17040387	1.00[ASN][1000 genomes]
rs17040388	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17040390	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28528383	0.90[ASN][1000 genomes]
rs28642881	1.00[ASN][1000 genomes]
rs28681408	1.00[MEX][hapmap]
rs34011966	0.92[EUR][1000 genomes]
rs34286241	0.86[EUR][1000 genomes]
rs34839743	0.96[EUR][1000 genomes]
rs35525444	0.87[EUR][1000 genomes]
rs6533434	1.00[MEX][hapmap]
rs66650623	0.87[EUR][1000 genomes]
rs6818911	1.00[MEX][hapmap]
rs6825928	0.88[MEX][hapmap]
rs6826810	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835683	1.00[MEX][hapmap]
rs6841198	1.00[MEX][hapmap]
rs6854151	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs714586	1.00[CEU][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs7436583	1.00[MEX][hapmap]
rs7675602	1.00[MEX][hapmap]
rs7681671	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9985632	0.88[MEX][hapmap]
rs9999570	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110291000-110294600	Weak transcription	HSMMtube	muscle
2	chr4:110292800-110297000	Weak transcription	Placenta	Placenta
3	chr4:110293600-110294000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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