Variant report

Variant	rs7681671
Chromosome Location	chr4:110307847-110307848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13126829	0.89[AFR][1000 genomes]
rs13141018	0.91[EUR][1000 genomes]
rs13147221	0.91[EUR][1000 genomes]
rs13147935	0.86[EUR][1000 genomes]
rs17040388	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040390	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34011966	0.97[EUR][1000 genomes]
rs34286241	0.91[EUR][1000 genomes]
rs34839743	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35525444	0.92[EUR][1000 genomes]
rs66650623	0.92[EUR][1000 genomes]
rs6826810	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6854151	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs714586	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7665024	0.89[AFR][1000 genomes]
rs7691652	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7694523	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110300600-110308600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:110304800-110309000	Enhancers	Fetal Muscle Leg	muscle
3	chr4:110305200-110308000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:110305600-110310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:110306600-110316400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:110306800-110308000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:110307400-110308000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:110307400-110308000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:110307400-110308800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:110307600-110308200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:110307800-110308600	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr4:110307800-110310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:110307800-110310200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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